Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01393 ATGGACACGCCAGATAGGAGCAAGATCAACACCCCTCTTTCCCAATTTGAGGATTCGCCTGTGTTTAAGTATATCAGTAATCTATCTCCTATAGAGCCCGTTAAATCTGTTCACGTTACTCAGACATTCAACTCATATAGCTTTTCATCCCCTCCATCTGTTTTCACATCACCCCATGGCAACTGTCACAAGGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGAGACATCCAAACCTAAGGTTTCGTCTGAAGATGTAAATAATGTTTATTCATGTGAAGAGACTCCTGCAGATTCAGCTCAAGCATGTCATGAATCAAGTGAGCAACAGGAAAATACTGCTCAAAAGATTTCCGTTGCAGATGCCTCAATTGAGCCATGTAATGAAAATAAAAACCCAAATATCTCAATTGAGCTTCCACAAGTCTTAAAATATAATTTGGGTAGCCCAGGGTATGAACCTCTACTCTATGGTGATGAGGCTAATTCTCTTTTGGAATTGCCTGGCAATGGCAAGCCAGCATCAGATGTTGCTTCTGTTCCAGAAGGCTCTGAAAAAGATTCAATTGAGGGTGAAATGCATCTTCCGGGATTATGTCAGATTGAGGAGGCAAAAGTTGAAGGCCAAGATTGTGGTGTGGATAGTTTGATTACTGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAGAAGCTTTTAAGGGTTTAAATAAACAATTAAATCCTTCAATTGAGCTTAGCAATATTATGACTGTGATACCACAATTTGCCACCAATGATGGTCAACAAATGCACATTGGTAATGCAGTTGCTTCTGGTTCAGAACATGAAATTGAAGATCATCCTTCTGAATCAGCAGCTGCCACAGGCACAAGTCAGAGACAGGACAATCTTGGCAATCTTGCTTTGGTGACTAGCAATCCAAGTGAAAAGATGGATAATAAGCTTGTTTATGTGACACACCGTGGTATACGGAGACGCTGTCTAGATTTTGAAATGGCCAGTGTGCAAAGGAGGAACCCAGCTGATAATTCAAACACCAACTCAAGTACAGCAAAATCTGAGGAGAGGAATGTTAGTAATGAAAAGCAACTGCTTCCCACAAAACACAGTGGGGATTCACGGAGATGTGTTTTGCCAGGAATTGGTTTGCACTTGAATGCACTTGCAAGCTTAAAGGATTGCAAAAACATAAAAATTGACACATTGTCATCTGGAAGGCAACCTAATCTGCTCAGCTCTCCTTCATCTGTGCAACTCTCTCCAAGCCAAGAACATCAACTATCATTGGTACCTGCATCAGTGGAAAGAGATTTGGAGCCATTGGAGAATGAGGTTCAGCCTGGTGAAGATTGTACCCAGTCATTGGTATTGGTTCAGATGGCTGGTGAAGATTTCCAGCAGAATAGTCCGAAAAAGAAAAGGCGCAAGTTGGAACCAGCTGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAATGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAACCTTGTGCATGCCGCGATTGCTTCAATAAACCTATTCATGTTGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGGATGACCTTAACAAAACTCCAGCCTCAGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCGTAAGCTGTAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATGGTTCTGTTCCTTCTGGATTAGAAGCCGAACCTGAAGAAGAAACAGAAGCATGCGAAAAGGGTGTGGTGGAAAATGCTTCATGGAAAACTGAAACTCAGAATACCGAAGACCATCCCGACCAATCTCTTGCTACAACACCATTACCGCTTTCCAGATCATTGCTTCCATTATCCTTTTCATCAAAGGGTAAGCCACCAAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTGAGCCAAAAGCTTGGGAAATCAAATGCTCCGCGGTCTCAACATCAACCCAAATGTGTAAAGCCTTTGCAAACTGTTCCAGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCTCCCAACGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCACCTACTACTCGCAGAGGTGGGAGGAAGTTGATATTACAATCTATCTCTTCATTTCCTTCTCTCACCCCTCACCATTAG 2325 0.4245 MDTPDRSKINTPLSQFEDSPVFKYISNLSPIEPVKSVHVTQTFNSYSFSSPPSVFTSPHGNCHKESRFLRRHNLLETSKPKVSSEDVNNVYSCEETPADSAQACHESSEQQENTAQKISVADASIEPCNENKNPNISIELPQVLKYNLGSPGYEPLLYGDEANSLLELPGNGKPASDVASVPEGSEKDSIEGEMHLPGLCQIEEAKVEGQDCGVDSLITEASDLLMFSPPEAFKGLNKQLNPSIELSNIMTVIPQFATNDGQQMHIGNAVASGSEHEIEDHPSESAAATGTSQRQDNLGNLALVTSNPSEKMDNKLVYVTHRGIRRRCLDFEMASVQRRNPADNSNTNSSTAKSEERNVSNEKQLLPTKHSGDSRRCVLPGIGLHLNALASLKDCKNIKIDTLSSGRQPNLLSSPSSVQLSPSQEHQLSLVPASVERDLEPLENEVQPGEDCTQSLVLVQMAGEDFQQNSPKKKRRKLEPAGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCACRDCFNKPIHVETVLQTRQQIESRNPLAFAPKVIRSSDSVSEIGDDLNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNTYGRKDGSVPSGLEAEPEEETEACEKGVVENASWKTETQNTEDHPDQSLATTPLPLSRSLLPLSFSSKGKPPRSFVTTISSSGLFVSQKLGKSNAPRSQHQPKCVKPLQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTTRRGGRKLILQSISSFPSLTPHH 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01393 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 488 523 IPR005172 -
Gma20g01393 774 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 609 IPR005172 -
Gma20g01393 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 774 - -
Gma20g01393 774 MobiDBLite consensus disorder prediction 271 299 - -
Gma20g01393 774 MobiDBLite consensus disorder prediction 718 774 - -
Gma20g01393 774 MobiDBLite consensus disorder prediction 614 633 - -
Gma20g01393 774 MobiDBLite consensus disorder prediction 724 774 - -
Gma20g01393 774 SMART CXC_2 571 612 IPR033467 -
Gma20g01393 774 SMART CXC_2 485 526 IPR033467 -
Gma20g01393 774 MobiDBLite consensus disorder prediction 338 355 - -
Gma20g01393 774 MobiDBLite consensus disorder prediction 285 299 - -
Gma20g01393 774 ProSiteProfiles CRC domain profile. 486 611 IPR005172 -
Gma20g01393 774 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 774 IPR044522 GO:0003700
Gma20g01393 774 MobiDBLite consensus disorder prediction 335 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01393 Gma-Chr20 41010696 41016340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01393 11 774 CPP Transcription Factor Family AT3G22780 41.384 7.95e-151 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gma20g01393 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01393 - - gmx:100811662 1509.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02322 10 50831587 50836809 Gma20g01393 20 41010696 41016340 GST