Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01392 ATGCTCTTGAAAATTTGCAAGTGGCCAAAAGGAAAGGTGAATATTAAAGAGGAAAATGTCAGAACTAAAGAAAACATAGTGCCAAAGCCTTTGACTCTTAGCAACCCTGGCGCTACAAGTTGTGCAAATTCGTTTTTGGAATTTGAGGTTGTCAAATTTGGGGGGATCGAGATGCATTCAGAAGGTGGGGTTACACCGAAGATGGGATTGGAAGCTGTACCTTCGAATTCAAAGATGATATGTAGTGAAAACCTTAGCAGCAAAAATATGAATTTTAGAGCCGATAAAATTGATCTGATGAATTTGGATGTCATGCTAGAAAAACACGTCAACAGGATTTTTTCCAAAAGCATTGAGGCAAAAAGGCATAAAGAGTCATGGGAGATTGATTTGACCAAATTGGATTTACAATATTGTGTAGCTAATGGGGCCTATGGCACTGTCTACAGGGGTACTTATGACAATCAAGATGTTGCAGTGAAAGTCTTGGACTGGGGTGAGGATGGTGTTGCCACTGCTGTTGAAATTGCTGCTTTACGAGCATCATTTTGGCAGGAGGTTACTGTATGGCAAAAACTTGATCATCCAAATGTCACAAAATTCATTGGGGCTTCAATGGGCACTTCAAATCTTAAGATTCCCTTACCAAGCTGTGGTCAAAATTCTGTTCCTTCCAAGGCATGTTGTGTTATTGCTGAGTTTCTTCCTGGTGGAACATTGAAACAATACTTGTTTAAAAATAGGCAGAACAAACTTCCATATAAGGTTGTGATTCAGCTGGCTTTAGACCTCTCTAGAAGTCTTAGTTATCTACATTCAAAGAAAATTGTTCATCGCGATGTAAAAACTGACAATATGCTGTTAGATGCCAAACAAAATTTGAAAATAGCTGATTTTGGAGTTGCTCGTGTAGAAGCTATAAATCAAAGTGAGATGACAGGTGAAACTGGAACCTATGGATATATGGCACCGGAGGTTTTAAATGGCAAGCCTTACAACAGAAAATGTGATGTCTATAGCTTTGGCATTTGCTTGTGGGAAATTTATTACTGTAATAGGCCTTATTCAAAGCTAAGCCTTGCTGCTGTGTCACGTGCAGTTATTAATCAGCATTTACGACCAGAGATTCCAAGAAGTTGTCCAAGTGCCTTATCAAACATCATGCGAAAATGCTGGGATGCTAAACCAGAGAAGCGTCCAGAAATGCATGAGGTGGTGGAAATGTTAGAAGCAATTGATACAAGCAAAGGAGGTGAAATAATATGCAAAGATAAAAATCCATTTTGTTTGTGTTTTGTACCTTCTTGTCGTCCCTAA 1317 0.3895 MLLKICKWPKGKVNIKEENVRTKENIVPKPLTLSNPGATSCANSFLEFEVVKFGGIEMHSEGGVTPKMGLEAVPSNSKMICSENLSSKNMNFRADKIDLMNLDVMLEKHVNRIFSKSIEAKRHKESWEIDLTKLDLQYCVANGAYGTVYRGTYDNQDVAVKVLDWGEDGVATAVEIAALRASFWQEVTVWQKLDHPNVTKFIGASMGTSNLKIPLPSCGQNSVPSKACCVIAEFLPGGTLKQYLFKNRQNKLPYKVVIQLALDLSRSLSYLHSKKIVHRDVKTDNMLLDAKQNLKIADFGVARVEAINQSEMTGETGTYGYMAPEVLNGKPYNRKCDVYSFGICLWEIYYCNRPYSKLSLAAVSRAVINQHLRPEIPRSCPSALSNIMRKCWDAKPEKRPEMHEVVEMLEAIDTSKGGEIICKDKNPFCLCFVPSCRP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01392 438 Gene3D Transferase(Phosphotransferase) domain 1 237 425 - -
Gma20g01392 438 SMART serkin_6 134 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01392 438 SUPERFAMILY Protein kinase-like (PK-like) 118 409 IPR011009 -
Gma20g01392 438 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 75 430 - -
Gma20g01392 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Gma20g01392 438 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Gma20g01392 438 ProSiteProfiles Protein kinase domain profile. 134 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01392 438 Pfam Protein tyrosine and serine/threonine kinase 138 409 IPR001245 GO:0004672|GO:0006468
Gma20g01392 438 PRINTS Tyrosine kinase catalytic domain signature 232 245 IPR001245 GO:0004672|GO:0006468
Gma20g01392 438 PRINTS Tyrosine kinase catalytic domain signature 336 358 IPR001245 GO:0004672|GO:0006468
Gma20g01392 438 PRINTS Tyrosine kinase catalytic domain signature 380 402 IPR001245 GO:0004672|GO:0006468
Gma20g01392 438 PRINTS Tyrosine kinase catalytic domain signature 270 288 IPR001245 GO:0004672|GO:0006468
Gma20g01392 438 CDD STKc_MAP3K-like 143 409 - -
Gma20g01392 438 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01392 Gma-Chr20 40995052 41003190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01392 84 438 MAP Kinase Kinase Kinase AT3G22750 68.539 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma20g01392 PK_Tyr_Ser-Thr 1.4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01392 - - gmx:100807899 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01392 20 40995052 41003190 Gma01g02361 01 58493497 58497412 PCT