Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01386 ATGTCCTCTTCCACATATGACTCCTCTAACCTTTTCCCTAACTTCCCTTCGTCTTCTTACCCTATCCTTCCTTTTCTCATTGATCCTGAAAATGATTTTGCAAGCCACACCCTTCTTGATGACCACCCTCTTGTTGTTCCCGCCGGCCTCATACATGATCCTCCATTACTCCCTGAAGAAACCGTTGCCAATTTTGCAGTTGCAGCTGACTGCACTGCCGCCATGCTTGAACACGATGCAGCAAACACTAACTATGGTTCCCACTATGGTAGCAGCGTTTCCAATTTTCTCACCCAGAAACCTGCTGCAGCCACAGCCAAAAAAGACAGGCACAGTAAGATTCACACATCTCAGGGTTTGAGGGACCGGAGGGTGAGATTATCAAGCGAAATAGCCCGCAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACCTTCGATTGGCTCTTCACAAAGTCTGAGAATGCAATCAAAGAACTAGCCCGAAGTAAGCATAGCGGCAGTGTTAGTCGGGGTGACATTAAGTATTCCCGCTACCCGTCTGTGGATTCAAACAACAACAACAAATCATTGGTGGATGGTGGTGATGCTTCCCGAGGGAGGAAGTTGAAATGGGCACAGAGGGATGATGTTTGTGTTCAGAACAAAAAAGAGTcaagggaaagggcaagggcaagggcaagagaaaggACTTGTTACAAGATGTGTAGCTGTAGTAGAAGGGTGCAGCAGAAGGACTCTGATGAAAGGTTCCCTGCAACTACAAACACTCAAATGCTACACCAATTGAGGTCTTCCATTCAGCCTGAACTTGAAGATCAACCTCGTGCAAGATGGGTTCAGCCTTATTATAATAACCCTTATTTCATTGATAATGAAGCACCAAGAAATGGCTTTAACGTCATCGAAGAATCTATTATGATAAAAAGGAACATGAAGCCTTCATCTCACCAAAACCTTGTGATCCCTAGGGATGCAAGTTTCAACAACAATGAGTTCCCCCTATTACCCTATTCCAGTACTACTCCAAACTGGGATAGTACTAATGGGGCCGTTAACTTTGGTGGAATAAGCACGATGAATCTATCTACATGTTTCATGAACCCGTGGTAA 1128 0.4291 MSSSTYDSSNLFPNFPSSSYPILPFLIDPENDFASHTLLDDHPLVVPAGLIHDPPLLPEETVANFAVAADCTAAMLEHDAANTNYGSHYGSSVSNFLTQKPAAATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTFDWLFTKSENAIKELARSKHSGSVSRGDIKYSRYPSVDSNNNNKSLVDGGDASRGRKLKWAQRDDVCVQNKKESRERARARARERTCYKMCSCSRRVQQKDSDERFPATTNTQMLHQLRSSIQPELEDQPRARWVQPYYNNPYFIDNEAPRNGFNVIEESIMIKRNMKPSSHQNLVIPRDASFNNNEFPLLPYSSTTPNWDSTNGAVNFGGISTMNLSTCFMNPW 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01386 375 ProSiteProfiles R domain profile. 222 239 IPR017888 -
Gma20g01386 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 10 370 IPR005333 GO:0003700
Gma20g01386 375 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 10 370 - -
Gma20g01386 375 ProSiteProfiles TCP domain profile. 107 165 IPR017887 -
Gma20g01386 375 Pfam TCP family transcription factor 105 241 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01386 Gma-Chr20 40930257 40931384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01386 100 241 TCP Transcription Factor Family AT1G67260 42.405 2.16e-26 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma20g01386 TCP 5.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01386 - - gmx:100806832 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02328 10 50908926 50910071 Gma20g01386 20 40930257 40931384 GST