Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01345 ATGGAACTTCAGAGGCGCCAAGATCAGAGCCTCTCCCAGCGGAAGGGCCAGAAACGGAAGCTCGACGAGGAGCAGCACCACGAGGACCGCCAGATCTTGCCGGCGCCGCCCACCGCCGACGAGCGCGCCGCACTCCTATCCGACGTCGCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGCGGACAGATCCGCGGCCAAGCGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGATGTGGTGAACGTGATTGTTGAAGGAGGCGCGATTCCGGCGTTGGTGAAGCATCTTCAAGCGCCGCCTCTCAGTGACCTTGTCCAGCATCCGTTGCCGTTTGAGCACGAGGTTGAGAAAGGGAGCGCTTTCGCACTAGGACTTCTTGCCGTCAAGCCTGAACATCAGCAGCTGATTGTTGACAGTAGTGCTTTAACTCATCTTGTTGATCTTTTGAAGAGGCACAGGAATGGCTTAACTTCTCGTGCTATTAATAGTCTCATTCGTAGGGCAGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAACATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGCTCATTTGCTTGATTTTGCTGATGCAAAGGTGCAAAGAGCAGCTGCTGGTGCTCTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATAGTCGAATGCAATGCTCTTCCAACTTTGATTCTAATGCTACGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATTTAGTCCACTCTTCACCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAACCAGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCCTTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGGGAAATGTCTGCTTTTGCATTGGGAAGATTGGCCCAGGACCCACATAACCAGGCTGGTATTGCACACAATGGTGGCTTAGTGCCGTTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAAAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTAGCCAAAACGTTGAAAAGATTAGAGGAGAAGATTCATGGTCGTGTGCTGAACCATTTGTTATATCTCATGCGAGCTTCAGAAAAGGGCTGTCAAAGACAAGTTGCTTTGGCTCTTGCACATCTTTGCTCTTCAGATGATCAGAGAATAATTTTTATCGATCACTATGGTCTTGAGTTGCTTATTGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTAGCTTTAAGCAAGTTAGCCAATAAAGCCTTGACCTTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTATGTAAACAATGCTACATTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATCGAATTTGTCTTCTTGCATCATCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACACGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTGTATATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCTAGATCTTCTCCGAGCAGCCAATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCGCCAGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTTCAAGGCCAGGGCACTCTCTTCTGATTCAGCGCATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTCTCATGACAACCAACTGTAG 2124 0.4557 MELQRRQDQSLSQRKGQKRKLDEEQHHEDRQILPAPPTADERAALLSDVAEQVSILESTFTWNEADRSAAKRATHALADLAKNEDVVNVIVEGGAIPALVKHLQAPPLSDLVQHPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSSALTHLVDLLKRHRNGLTSRAINSLIRRAADAITNLAHENSNIKTRVRMEGGIPPLAHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDPHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRASEKGCQRQVALALAHLCSSDDQRIIFIDHYGLELLIGLLGSSSSKQQLDGAVALSKLANKALTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYTEKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIALDLLRAANQYLLEGLKRLCEYTIAQDISPENVSSMYELSEAFNAISLRHACILFILEQFDKLSSRPGHSLLIQRIIPEIRNYFVKALTKANSHDNQL 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01345 707 MobiDBLite consensus disorder prediction 1 35 - -
Gma20g01345 707 CDD BTB_POZ_ARIA_plant 527 642 - -
Gma20g01345 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 94 148 IPR000225 GO:0005515
Gma20g01345 707 Gene3D - 210 412 IPR011989 -
Gma20g01345 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Gma20g01345 707 SMART arm_5 83 135 IPR000225 GO:0005515
Gma20g01345 707 SMART arm_5 228 268 IPR000225 GO:0005515
Gma20g01345 707 SMART arm_5 468 508 IPR000225 GO:0005515
Gma20g01345 707 SMART arm_5 312 352 IPR000225 GO:0005515
Gma20g01345 707 SMART arm_5 186 226 IPR000225 GO:0005515
Gma20g01345 707 SMART arm_5 353 393 IPR000225 GO:0005515
Gma20g01345 707 SMART arm_5 270 310 IPR000225 GO:0005515
Gma20g01345 707 SMART arm_5 136 184 IPR000225 GO:0005515
Gma20g01345 707 MobiDBLite consensus disorder prediction 1 38 - -
Gma20g01345 707 SMART BTB_4 540 637 IPR000210 GO:0005515
Gma20g01345 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 703 - -
Gma20g01345 707 SUPERFAMILY POZ domain 532 634 IPR011333 -
Gma20g01345 707 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Gma20g01345 707 Gene3D Potassium Channel Kv1.1; Chain A 523 666 IPR011333 -
Gma20g01345 707 SUPERFAMILY ARM repeat 60 411 IPR016024 -
Gma20g01345 707 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Gma20g01345 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Gma20g01345 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 703 IPR044282 -
Gma20g01345 707 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Gma20g01345 707 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Gma20g01345 707 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Gma20g01345 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Gma20g01345 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Gma20g01345 707 Gene3D - 39 207 IPR011989 -
Gma20g01345 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Gma20g01345 707 SUPERFAMILY ARM repeat 438 608 IPR016024 -
Gma20g01345 707 Gene3D - 413 522 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01345 Gma-Chr20 40440678 40448749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01345 206 507 U-box Gene Family AT3G46510 25.413 6.01e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma20g01345 BTB 4.6e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01345 - - gmx:100796391 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02366 10 51282049 51291788 Gma20g01345 20 40440678 40448749 GST
Gma01g02392 01 58693471 58700568 Gma20g01345 20 40440678 40448749 PCT
Gma11g00040 11 315566 323757 Gma20g01345 20 40440678 40448749 PCT
Gma20g01345 20 40440678 40448749 Gma01g02392 01 58693471 58700568 PCT
Gma20g01345 20 40440678 40448749 Gma11g00040 11 315566 323757 PCT