Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01343 ATGGAGAAGGAGAATGAGCTCCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCGCGCGACCTACCTCTCCCCCCTCACATCCTCAATTCCGTCTCTTCCATCTACCGCAACAAACATGGTGATGGAGGGATTTCCAGAGAGGATTTGATGACGGATCTTGAAGATGCACTGTCAAAGCAGCGTCCAAATTGTGTGTCTGGTTTCAAATTGGAGCAAGCAAGGGATAATCGGTATCGGAGTCAGGTTCAGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACCAAGTGCTTGCTTGAACTTTATGGACTAAAGCTGGCAGAGTTGCAGATGAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGCTAAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCGCCGTCCATTGTATGGTGTTGGAGATCCATTTGCTGTGGATGCTGATGATCAATTAAGGAAGAAACGAGAGGCTGAGAGACTATCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGAAAATTTTTTGCCGAAATACTCAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTGTGAAGAGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGGGCAACTCGGGCAGAGAAATTGAGATTCCAAGCCTTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTGGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAATATTCAAATGGTATTGAACCCTTGGAAGATTCTGAAGCTGATTTACTGGAGTCAGATGCTTCTAAGAATGGAGTTTCTAAGGAATCACCTCTTGATGAAGATATAGATTTGATAGATTCTGATCATAATGGTGATTCTAGTGATTTACTTGAAGGTCAGAGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGCAACACACTGGAAATATAACCAACTTAGTTGTTTACAGGTAACTGAGCAACCGTCTATGCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAGACAATACAAACAATTTCGCTGATAGCACATCTTATGGAACACAAGGGTGTTACTGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTGCTGCCAAATTGGGTCAATGAATTCACAACATGGGCTCCTAGCATCACTGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTCTATTAACGCACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGCAGTACTTGATTGTGGATGAAGGGCATCGGTTGAAAAATCATGAGTCTGCTCTGGCAAGAACCTTGGACAATGGATATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGATCGAGTTGATGTCTCTCTCACAGATGAGGAACAACTATTGATCATCCGGCGTCTACATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGTGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTTTACAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTCGTGGGCGATTATGATATGTATAGACGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTAGACTTATGGACACTCTCGAAGTCTACTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCAACCTTCTACGAAAATTTAATGCTCCTGACTCCCCGTACTTCATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAATTTACAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCCCATCGCATTGGACAAAAAAAGGAAGTCAGGGTTTTTGTATTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGTCTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGTAGAGGTACAAGCTCACTTGGGACAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAGATGGATGAAGAGAGAAGACAAAAGGAGAACTACAGATCTCGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCAATGAACAAAGATGATAAGGCCAAAGATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTGCAATGGATGAAGGCTGTGGAGAATGGGGAAGACATATCAAAGTTTTCAGGTAAAGGAAAAAGAAGAGACCACCACTCATCTGACAGCATTGCACAAGCCAGTGATAATACAGGAGCAGAAGAAAGTTTAGAGTTGAAGACTGAAAGTGTTCCCATGGAAAATGAGCGAACAAGTGAAGATAGTTTCCATGTGACCCCTCCCGCAAAGAGATTCAATCCTGAAGGAACATTCCTGAAACAGACATACGAGGATGTTGGAAGTGGTTTGAATCACCATTTGTTATCATGGAATACTCACAAAAAGAAAAGGTCAAGCTTTCTTGGCCAAGGTTCATTATCTGAAACTAGAGGGCATTCTTCAAATGGAAGAGCAAACTGGAACTGA 3261 0.4186 MEKENELHAKTLICALNLLSRDLPLPPHILNSVSSIYRNKHGDGGISREDLMTDLEDALSKQRPNCVSGFKLEQARDNRYRSQVQHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQMKVRSDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAVDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASVKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDNKYSNGIEPLEDSEADLLESDASKNGVSKESPLDEDIDLIDSDHNGDSSDLLEGQRQYNSAIHSIQEKATHWKYNQLSCLQVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEHKGVTGPHLIVAPKAVLPNWVNEFTTWAPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWQYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPVKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPMNKDDKAKDFNSGVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSGKGKRRDHHSSDSIAQASDNTGAEESLELKTESVPMENERTSEDSFHVTPPAKRFNPEGTFLKQTYEDVGSGLNHHLLSWNTHKKKRSSFLGQGSLSETRGHSSNGRANWN 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01343 1086 MobiDBLite consensus disorder prediction 312 342 - -
Gma20g01343 1086 Pfam Snf2-ATP coupling, chromatin remodelling complex 903 962 IPR029295 GO:0042393
Gma20g01343 1086 Gene3D - 350 609 IPR038718 -
Gma20g01343 1086 MobiDBLite consensus disorder prediction 319 341 - -
Gma20g01343 1086 SMART ultradead3 381 574 IPR014001 -
Gma20g01343 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 863 IPR027417 -
Gma20g01343 1086 Pfam Helicase conserved C-terminal domain 696 809 IPR001650 -
Gma20g01343 1086 Pfam SNF2-related domain 388 676 IPR000330 GO:0005524|GO:0140658
Gma20g01343 1086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 397 563 IPR014001 -
Gma20g01343 1086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 699 866 IPR001650 -
Gma20g01343 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 610 IPR027417 -
Gma20g01343 1086 MobiDBLite consensus disorder prediction 1066 1086 - -
Gma20g01343 1086 Gene3D - 616 916 IPR027417 -
Gma20g01343 1086 PANTHER SNF2/RAD54 HELICASE FAMILY 48 1014 - -
Gma20g01343 1086 Coils Coil 900 920 - -
Gma20g01343 1086 Coils Coil 172 192 - -
Gma20g01343 1086 MobiDBLite consensus disorder prediction 1005 1022 - -
Gma20g01343 1086 CDD SF2_C_SNF 687 820 - -
Gma20g01343 1086 MobiDBLite consensus disorder prediction 972 988 - -
Gma20g01343 1086 SMART SnAC_2 902 962 IPR029295 GO:0042393
Gma20g01343 1086 PANTHER ATP-DEPENDENT HELICASE BRM 48 1014 - -
Gma20g01343 1086 MobiDBLite consensus disorder prediction 972 1032 - -
Gma20g01343 1086 SMART helicmild6 725 809 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01343 Gma-Chr20 40409704 40422283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01343 692 837 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.16e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma20g01343 SNF2_N 2.9e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01343 - - gmx:100796912 2123.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02370 10 51307560 51317718 Gma20g01343 20 40409704 40422283 GST