Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01335 ATGCAAGCACCACAGCTGCAGTTTTTTCCATCTCAGGGTCCAACACCCTCACAATTTAGTCAAGGGAGctcagcaattccagctcatcgtggctcctctcaacggttgttaacggctagtgaagtccttcagGATTCTGTTGGGACTGAGTTTAATCCAGATATTCTGAAGGTTTGTCATGAGTCTGCAGTGAATGCCTTGTATGGTGATCTCCCTAGACAATGCAAAACTTGTGGGCTCCGATTCAGAAGCCAAGAGGAACACAGTAGCCATATGGATTTGCATGTGACTAAGAATCGGATGTCTAAAAGCCATAAGCAGAAGCCCTCTCGCGTGGATAGGTCACAGTTAGGCCCCATAATTCATGCTAAATGCAGATCATGCTCTAATATGCAGTATGCTGATGAAGAGGGTGCCAATGCAGATCATACTAAAGTTGACCAGTTTTGTGCATTGTAA 459 0.3813 MQAPQLQFFPSQGPTPSQFSQGSSAIPAHRGSSQRLLTASEVLQDSVGTEFNPDILKVCHESAVNALYGDLPRQCKTCGLRFRSQEEHSSHMDLHVTKNRMSKSHKQKPSRVDRSQLGPIIHAKCRSCSNMQYADEEGANADHTKVDQFCAL 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01335 152 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Gma20g01335 152 MobiDBLite consensus disorder prediction 88 112 - -
Gma20g01335 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Gma20g01335 152 MobiDBLite consensus disorder prediction 1 33 - -
Gma20g01335 152 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 37 111 - -
Gma20g01335 152 MobiDBLite consensus disorder prediction 88 113 - -
Gma20g01335 152 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 112 131 - -
Gma20g01335 152 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 112 131 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gma20g01335 152 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 37 111 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01335 Gma-Chr20 40320534 40322008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01335 44 111 C2H2 Transcription Factor Family AT4G04885 72.059 6.17e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g01335 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01335 K14400 - gmx:102662711 146.747