Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01334 ATGGAGATGTCATTACAGAGAACATCCTCGGAGAATAATTCGGGAAGGAACCGTGAGGAACAGGAACCTTCGAACAAAGAAACCACCATGGAAGCTCCTGCTTCCGGTGACGACGACCAAGATCTCGAAGAAGGATTCAAAAGGAGGCGCCACACCCGCCACACACACCACCAAATTTCGGAGATGGAATCTTTCTTCAAGGGTTGCCCTCACCCTGATGAAAAGCAAAGGAAAGCGCTTGGTCGCGAGCTCGGATTGGAGCCTTTGCAAATCAAGTTTTGGTTCCAAAACAAGCGCACCCAAGTGAAGACGCAACAAGAACGATATGAAAACAATCTTCTGAGGGTTGAAAATGACAAGCTTCGAGCAGAAAACCGTAGGTACAGGAATGCACTAGCTAATGCTTTATGCCCTAGCTGTGGAGGCCCTACTGCTCTTGGAGAGATGTCCTTTGACGAGCAGCAGTTGAGGATCGAGAATGCACGATTAAAAGAGGAGATTGCTAGTATGTCAGGACCTGCGGCCAAGCATGCTGGAAAATCTGGAAGCAATTCGTACTGTAACATGCCATCTCAAAACCAGATGCCTTCGCGCTCGCTAGATCTGGGAGTTGGTAACAACAACAAGAACAACAACTTTGTAGCTGTAGCACAAGCACAACCTGCAGCCATGGTTGGGGAAATATATGGTGGCAATGATCCTCTTAGGGAACTCCCCCTTTTTTCTTGTTTTGATAAAACTTTAATTGGGGAGATTGGTCTGGTGGCAATAGAGGAAATCAACCGGTTGTCTCTGTCTGGAGATCCTTTGTGGGTCCCTGGCAACTACGGCAGTGAAGTTGTAAATGAAGATGAATACCTGAGGGTTTTCCCTAGGGGCATAGGTCCAACACTCTTGGGCGCAAGAACCGAATCTTCTAGGCAAACAGCCATAGTTATCATGCATCATATGAAACTCGTTGAGATGCTTATGGATGTCAATCAATGGTCAAACATGTTTTGCGGCATCGTTTCAAGGGCGGTAACACACGAAGTGCTGTCAACTGGAGAAACTATAAGATACGATGGTGCCTGCCAAGTGATGTCAGCTGAGTTTCAGGTTCCTTCACCCCTTGTTCCTACTCGTGACAACTATTTCATCAGGTTCTGTAAGAAGCACCAAGGACAATCGTGGGCGGTGGTTGATTTTTCAATGGATCATCTGCGACCTGGTGCAATCACAAAAATTCGAAGACGACCCTCTGGTTGCATAATTCAAGAATTGCCAAATGGTTACTCAAAGGTCATATGGGTTGAACATGTAGAGGTGGACGACAGCGAGGTGCATAATCTTTACAAAAATTTGGTTGATTCTACCCTTGCGTTTGGAGCTAAACGTTGGGTTGCAGCAATTGATAGGACATGCGAACGTCTTGCTAGTGCAATGGCCACCAACATACCCCAAGGGGCACTTTGTGTGATAACAAGTCACGAGAGTCGGAAAAGCATGATGAAGCTGGCTGAAAGAATGGTATTGAGCTTTTGTACTGGCGTTGGTGCTTCAACTGCAAATGCCTGGACACCACTACCAAGTGGTCTTGAAGATGTTAGGGTCATGACCAGAAAGAGCGTTGATGATCCAGGCAGACCTCCTGGTATAGTGCTCAGTGCTGCAACTTCTCTCTGGCTCCCAGTTCCTGCAAGGAGAGTTTTTGAGTTTCTTAGATCAGAAAACACAAGAAATCAGTGGGACATTCTGTCAACCGGGGCTCAAGTGAACGAACTTGCACATATTGCTAACGGGAGAGACCATGGAAATTGTGTCTCTCTTCTTCGAGTGAATACTCAGAATGTGGGCCAGAACAATATGCTGATACTTCAAGAGAGTTTCATTGATGCTACAGGCTCATTTGTGATTTATGCTCCTATTGATGTAGCTGCCATAAATGTTGTGTTGGGAGGTGGTAATCCAGATTATGTGGCCCTGCTCCCTTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGGACTGAACGGAGGGCCCGGGCCCATATGTGAGGCTGGATCCGGAGGAGGCTGTCTTCTCACAGTTGCGTTTCAGATACTGGTGGATTCAGCTCCGACTTCGAAAATCTCTGTTGGTTCCGTGACAACTGTTAACAGTTTGATAAAGAGAACAGTTGAAAAGATCAGAGATGCAGTGTCGCTTGATGGCAACTAA 2196 0.4672 MEMSLQRTSSENNSGRNREEQEPSNKETTMEAPASGDDDQDLEEGFKRRRHTRHTHHQISEMESFFKGCPHPDEKQRKALGRELGLEPLQIKFWFQNKRTQVKTQQERYENNLLRVENDKLRAENRRYRNALANALCPSCGGPTALGEMSFDEQQLRIENARLKEEIASMSGPAAKHAGKSGSNSYCNMPSQNQMPSRSLDLGVGNNNKNNNFVAVAQAQPAAMVGEIYGGNDPLRELPLFSCFDKTLIGEIGLVAIEEINRLSLSGDPLWVPGNYGSEVVNEDEYLRVFPRGIGPTLLGARTESSRQTAIVIMHHMKLVEMLMDVNQWSNMFCGIVSRAVTHEVLSTGETIRYDGACQVMSAEFQVPSPLVPTRDNYFIRFCKKHQGQSWAVVDFSMDHLRPGAITKIRRRPSGCIIQELPNGYSKVIWVEHVEVDDSEVHNLYKNLVDSTLAFGAKRWVAAIDRTCERLASAMATNIPQGALCVITSHESRKSMMKLAERMVLSFCTGVGASTANAWTPLPSGLEDVRVMTRKSVDDPGRPPGIVLSAATSLWLPVPARRVFEFLRSENTRNQWDILSTGAQVNELAHIANGRDHGNCVSLLRVNTQNVGQNNMLILQESFIDATGSFVIYAPIDVAAINVVLGGGNPDYVALLPSGFAVLPDGPGLNGGPGPICEAGSGGGCLLTVAFQILVDSAPTSKISVGSVTTVNSLIKRTVEKIRDAVSLDGN 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01334 731 Gene3D - 310 470 IPR023393 -
Gma20g01334 731 Pfam START domain 257 470 IPR002913 GO:0008289
Gma20g01334 731 SUPERFAMILY Bet v1-like 491 722 - -
Gma20g01334 731 CDD homeodomain 58 106 IPR001356 GO:0003677
Gma20g01334 731 MobiDBLite consensus disorder prediction 1 42 - -
Gma20g01334 731 SUPERFAMILY Bet v1-like 305 472 - -
Gma20g01334 731 SMART START_1 251 470 IPR002913 GO:0008289
Gma20g01334 731 SMART HOX_1 47 109 IPR001356 GO:0003677
Gma20g01334 731 CDD START_ArGLABRA2_like 246 469 - -
Gma20g01334 731 ProSiteProfiles START domain profile. 242 473 IPR002913 GO:0008289
Gma20g01334 731 Coils Coil 99 131 - -
Gma20g01334 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 16 728 - -
Gma20g01334 731 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 728 IPR042160 -
Gma20g01334 731 SUPERFAMILY Homeodomain-like 43 111 IPR009057 -
Gma20g01334 731 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Gma20g01334 731 Gene3D - 35 117 - -
Gma20g01334 731 Pfam Homeodomain 48 103 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01334 Gma-Chr20 40306640 40311355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01334 9 730 Homeobox Transcription Factor Family AT4G21750 61.816 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma20g01334 START 1.4e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01334 K09338 - gmx:100793758 1423.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02379 10 51400645 51424512 Gma20g01334 20 40306640 40311355 GST
Gma01g02402 01 58768928 58772133 Gma20g01334 20 40306640 40311355 PCT
Gma11g00031 11 232747 235881 Gma20g01334 20 40306640 40311355 PCT
Gma20g01334 20 40306640 40311355 Gma01g02402 01 58768928 58772133 PCT
Gma20g01334 20 40306640 40311355 Gma11g00031 11 232747 235881 PCT