Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01317 ATGGGTTCTTTTCATTTTTTCCTTCTGCTCCTAACTTTCTTTTCCCTCTTTGTTCACACCTCTCCCTCCCCTATCATCCAAGCAGCTATCGATCAAGGTACCAAAGCCTACTATAACTGCACAAGGAACAGCACTTTTGCTGCCTATAGCTCTTACCGTTCTAACGTCAAAACACTTCTAGATTTTCTCTCCTCCAATAGCACCAACAATGCCAGATTCTACAACACTACAGTTTCTAGCAAAGACACTGTTTACGGTAGCTTCCTATGTAGAATAGACACCACTCCAAAACACTGCCAAGAATGCGTGACACAAGCTGCCAAACTCATATCATCGCTTTGCAAAAATGCTACAGAGGCTATAGTATGGTACCAAGTATGCTATGTGCGCTACTCCGATCGTCGTTTCTTCTCCACCGTGGAGGAGAGTCCTAAACTCTCCTTTATGAATGATAAAGATTATGTGGGTAACGTTGGGCTCTTCAACAACATTGTGTGGGATATGATGAACGATTTGAGAAGTGAAGCAGCAAGTGCTGCTAATAAATCGGCTGATAAGTCTGTGAACATCATTGATAATGAAAAGGTATATGGCTACGCTTGGTGCCTCCCATATCTGTCCAAAGAGAACTGCAGCTGGTGTCTTAGCGATGCCATAGCAGAAATTCCAACTGGTTGCTGCAGAGGAAAATCTGGGGGAACAATAATATATCCCAGTTGTGGTGTTAGATACGAATCATATCAATTCCATAAGGCACAAATCAGGGGTGGTTCGGTGACGCCGCCGCCACTTCCCAGTAGTCCTTCCCCTTTTGCTTCACCAGggaaaagaaaacaaaagacactaacaataattgtgattgtagttccaattgttgtttcactggtgcttctatctttgggctgctgctgctttttacatagaaaagcaacaaagaatcaacatgatattctcaaagaaaactttgggaatgacagtaccactctggaaaccttgcgatttgaattagccaaaattgaagctgctacaaacagatttgctaaggaaaacatgataggcaaaggcggatttggagaggtttataggggtattcttttggatgggcaagaaatagcagtgaagaggcttactggaagctcccggcaaggagcagtggagtttaaaaacgaggttcaggttatagcaaagcttcaacacagaaatttagtaaggttactaggattttgcttagaagatgatgaaaagatacttatttatgagtatgtgccaaacaagagccttgactattttttattggatgccaagaagagaagactactatcttggtctgaacgtcaaaagatcattataggaattgctcgaggaattctatatctacatgaggattcttgcctcaaaataatacatcgtgatttaaaacctagtaatgttttgctagacagtaatatgattcccaaaatatcagattttggcatggctagaattgttgctgcagatcaaattgaagaaagtacgggcagaattgtagggacatatggttatatgtcccccgagtatgcaatgcatggacaattttctgtgaagtccgatgtgtttagttttggagtcatggttctagagattattaatggaaagaggaaaggttgttcttctgaatcagatggtattgatgacatccggagacatgcttggacgaaatggacagagcaaacaccattggaactattggatcctaacataggaggaccatattccggagaagaagtcatcaaatgcatacacattgCACAGCACGGTCGTGGTTATTCATTCCCCGATTGTTCTTCAAGCATAACCACCCCAAACAGCCCCTACCAATTGAACTTGAGGAGACTTCTGTCTTATCTATCTTCCAACGCCACTTCTAGCAGGCAATTCTATAATACCACCGTCACCAGTAGAAACCACTCCGACAGTACTGTCTACGGAATGTTCTGGTGCGGGGGTGACGTCCCCACCCAGCTTTGTAGCGAGTGCGTCGCAAACGCAACCAAATCAATATTCTCAGATCCAGATTCTTATCCAAATTGTTCCTTGTCCACAGATGCGAGGATTTGGTACGACTACTGCATGATTCGCTTCTCAAACAGTTCTTTCTTCTCCACAGTTGACTCAGGACTAATCAGCGCTGGATGCGACCCTTTCGATGTGTCCAACCAGACAAACTGGGTGAGTGTGCTTTCCAAAACGATTAACGAAGCAGCAGATGAGGCAGCGAATTCGACTGTTAAATATGCAACAAAGGAAGCAAGGATATCCGGAGGATTTCAGAGCCTTTACTGTGAGGCACAGTGCACACCTGACCTCTCACCCCAAGATTGTAGAAAATGTCTAAATGTTGCCATAACCTATTCTCAACAGTCCTGTCAAGGCTTCCTGGACTATTATTCTCTCAGCTGTACAATCATGTGCAATTCCTACCCTTTCTATCGCCCCGGTACTGCTCCGGCACCAAAAGGACTCGTTCCAGCTCTCACGAATTCTTCCAATGTTACAGATCACTCACAAGATCCTGCAGCTTATCTTTCCCACAATTGTTCCATAAACAAGATCACCACCGACATCACTTTTCTGTCAAATCTCAAGACACTTCTCTCCTTCTTGTCTTCTAATTCCACCATCAAAACCAGTTTCAAGACCACCGTCAGCACGATCGGTGGCCTCTTCATGTGCCTCGGGGACCTTTCTCTTACCCTTTGCCAGCTTTGTGTCCAAGATGCAATTCAAAGAATATCCTCAGAGTGCCCTTCCTCCAAAGAGGCCATCATTTGGTACAATCACTGCTTGCTTCGCTATAACGATACCCCGTCTTACTCCACACTCAACACAAGTAGCCCTTCCTATCGCGACTTCCACACCCTCAATACTACCAAACCCAACCAGCTTCAAAGCTTCTTCACTTGGACTCTGGCCAATACATTATACAAAGTGCAGTATGAGACAGATGACAGTACCATTAAGAATTATGCAAAAAAAGAAGAAAAACTGAATGATCACCAAACCCTCTATACTCTTGCTCAGTGCACGCCAGATCTAGTTAATCACGATTGCCAAGACTGTCTAGAAAACATTTTCAAATACGAAATTCCATGGTGTTGTATGGAAAGTCCAGAGGGACAAGTACTATATCCTAGCTGCTTTATCAAGTTTGGATTGTCCCCATTTTACACAGATGCTTCCCAAGATGAGGCTCGCAGGCCAGCTACAGgaaataagaaacctaggccacgaacaattatctttattgtagtcccgatcgttatctcgacggtactcttttccttttgctgctatttgttgcgagggataaaaagaagaaaagataattataaaactcctctcacaaaaaactttgttccggaaagtatcactttagaagggttgcaatttgatttaactaccgttaaagtagcaacaaataatttttcgcacgagaataagattggtaaaggtggatttggagtcgtttataagggtactctttgtgatggacgacaaatagctgtttttgctcagaagaacaagaaaaaattcttatttacgaatacctaccaaatgggagccttgattaccttttatttggtactaggcaacaaaagttaa 3642 0.2825 MGSFHFFLLLLTFFSLFVHTSPSPIIQAAIDQGTKAYYNCTRNSTFAAYSSYRSNVKTLLDFLSSNSTNNARFYNTTVSSKDTVYGSFLCRIDTTPKHCQECVTQAAKLISSLCKNATEAIVWYQVCYVRYSDRRFFSTVEESPKLSFMNDKDYVGNVGLFNNIVWDMMNDLRSEAASAANKSADKSVNIIDNEKVYGYAWCLPYLSKENCSWCLSDAIAEIPTGCCRGKSGGTIIYPSCGVRYESYQFHKAQIRGGSVTPPPLPSSPSPFASPGKRKQKTLTIIVIVVPIVVSLVLLSLGCCCFLHRKATKNQHDILKENFGNDSTTLETLRFELAKIEAATNRFAKENMIGKGGFGEVYRGILLDGQEIAVKRLTGSSRQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEDDEKILIYEYVPNKSLDYFLLDAKKRRLLSWSERQKIIIGIARGILYLHEDSCLKIIHRDLKPSNVLLDSNMIPKISDFGMARIVAADQIEESTGRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIINGKRKGCSSESDGIDDIRRHAWTKWTEQTPLELLDPNIGGPYSGEEVIKCIHIAQHGRGYSFPDCSSSITTPNSPYQLNLRRLLSYLSSNATSSRQFYNTTVTSRNHSDSTVYGMFWCGGDVPTQLCSECVANATKSIFSDPDSYPNCSLSTDARIWYDYCMIRFSNSSFFSTVDSGLISAGCDPFDVSNQTNWVSVLSKTINEAADEAANSTVKYATKEARISGGFQSLYCEAQCTPDLSPQDCRKCLNVAITYSQQSCQGFLDYYSLSCTIMCNSYPFYRPGTAPAPKGLVPALTNSSNVTDHSQDPAAYLSHNCSINKITTDITFLSNLKTLLSFLSSNSTIKTSFKTTVSTIGGLFMCLGDLSLTLCQLCVQDAIQRISSECPSSKEAIIWYNHCLLRYNDTPSYSTLNTSSPSYRDFHTLNTTKPNQLQSFFTWTLANTLYKVQYETDDSTIKNYAKKEEKLNDHQTLYTLAQCTPDLVNHDCQDCLENIFKYEIPWCCMESPEGQVLYPSCFIKFGLSPFYTDASQDEARRPATGNKKPRPRTIIFIVVPIVISTVLFSFCCYLLRGIKRRKDNYKTPLTKNFVPESITLEGLQFDLTTVKVATNNFSHENKIGKGGFGVVYKGTLCDGRQIAVFAQKNKKKFLFTNTYQMGALITFYLVLGNKS 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01317 1213 CDD STKc_IRAK 352 593 - -
Gma20g01317 1213 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 840 1182 - -
Gma20g01317 1213 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Gma20g01317 1213 Pfam Salt stress response/antifungal 607 709 IPR002902 -
Gma20g01317 1213 Pfam Salt stress response/antifungal 159 247 IPR002902 -
Gma20g01317 1213 Pfam Salt stress response/antifungal 976 1063 IPR002902 -
Gma20g01317 1213 Pfam Salt stress response/antifungal 40 133 IPR002902 -
Gma20g01317 1213 Pfam Salt stress response/antifungal 859 947 IPR002902 -
Gma20g01317 1213 ProSiteProfiles Gnk2-homologous domain profile. 961 1068 IPR002902 -
Gma20g01317 1213 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 596 - -
Gma20g01317 1213 SUPERFAMILY Protein kinase-like (PK-like) 328 593 IPR011009 -
Gma20g01317 1213 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Gma20g01317 1213 ProSiteProfiles Protein kinase domain profile. 346 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01317 1213 ProSiteProfiles Gnk2-homologous domain profile. 852 950 IPR002902 -
Gma20g01317 1213 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 596 - -
Gma20g01317 1213 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 604 828 - -
Gma20g01317 1213 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 840 1182 - -
Gma20g01317 1213 ProSiteProfiles Gnk2-homologous domain profile. 142 249 IPR002902 -
Gma20g01317 1213 SUPERFAMILY Protein kinase-like (PK-like) 1131 1183 IPR011009 -
Gma20g01317 1213 SMART serkin_6 346 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01317 1213 Gene3D Phosphorylase Kinase; domain 1 1118 1199 - -
Gma20g01317 1213 Gene3D Phosphorylase Kinase; domain 1 307 421 - -
Gma20g01317 1213 Gene3D Transferase(Phosphotransferase) domain 1 422 599 - -
Gma20g01317 1213 Pfam Protein tyrosine and serine/threonine kinase 349 545 IPR001245 GO:0004672|GO:0006468
Gma20g01317 1213 Gene3D - 959 1068 IPR038408 -
Gma20g01317 1213 Gene3D - 145 249 IPR038408 -
Gma20g01317 1213 Gene3D - 851 949 IPR038408 -
Gma20g01317 1213 Gene3D - 33 136 IPR038408 -
Gma20g01317 1213 Gene3D - 717 822 IPR038408 -
Gma20g01317 1213 Gene3D - 601 712 IPR038408 -
Gma20g01317 1213 ProSiteProfiles Gnk2-homologous domain profile. 600 712 IPR002902 -
Gma20g01317 1213 ProSiteProfiles Gnk2-homologous domain profile. 718 826 IPR002902 -
Gma20g01317 1213 ProSiteProfiles Gnk2-homologous domain profile. 34 136 IPR002902 -
Gma20g01317 1213 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 604 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01317 Gma-Chr20 40162923 40170633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01317 602 823 Receptor kinase-like Gene Family AT4G05200 36.364 1.64e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma20g01317 PK_Tyr_Ser-Thr 8.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01317 - - gmx:100792696 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02393 10 51516892 51542999 Gma20g01317 20 40162923 40170633 GST