Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01316 atgtgccgtggtgatgtcaccaaccacacgtgccaagaatgcgttaaaactgcaacccaacaaataactctacggtgtcccaactccaaagatgctttaatttggtaccacgaatgcttggtccgttactccaacagttGTTTTTTCTCCACCATGGAGGAATGGCCTAGGTTCGACCTCTTGGATTATTATAACGTAACTAAGAATTCAACAAAGGAAGGAAGTTACGGGTGGTTGTTAGCTAAAACGTTGAGTGATGCAGTGGGTGAGGCTGCGAACGCTGGCCCTGAGGGTACCATGAAATTTGCAACAAAAAACGCGACCTTGTCTGGATCTCAGAGTTTGTATACTCTAGTTCAGTGCACGCCGGATCTATCAAGCAAAGATTGCAGTAAGTGTTTGGGTGATATTATGAGAGATATTCCTTTATGTTGTCTTGGAAAGTGTGCGATGGTTCTATATCCAAGCTGCACTTTGATGTTTGGGTTAAGTCGTTTCTACAGAGACGTCGTTGCTCTTGGAGTTGTTGGTTCTAATATTGGTACACAAGAACCAGAACCTTCAGgaaacaaaaacagttcatcacgaccaattgttatagttgtcatccttctcattttggcaacgctaagctttttgcaatgttatttcttacgaagaagagcaagaaagcgtcattataatattcttctaagagaaaactttggtcgtgaaagtgtcactctagagggattgcaatttgagttggctataattaaaacagcaacaaataacttttcactcgaaaacaagattggaaaaggtggatttggcgaagtttacaagggtattcttccttgtggacgacacattgctgttaaaagactatcaacaagttctcaacaaggttcggttgaattcaaaaatgagattttattgatagcaaaattacaacataaaaaccttgtggagttaataggtttttgcctagatatgcaagagaagattcttatatatgaattcatgccgaacgggagccttgataagtttttatttggtactcaacaaaacagtataagttggtctaagcgctataaaattatagaaatgattgctcgaggagttctttatttacatgaatattctcgacttaaaattatacatcgtgatctcaaacctagtaatattttattagacgaacatatgaatcctaagatatcagattttggtatggctagaattgttgaaatagatcaagatcgtggaaaaaccaaaagaatagttggaacatggggttatatgtctccagaatatataatgtttggacaattttctgaaaagtcagatgtttttagttttggagtcatggttttagagattattacaggaaaaaggaatataaattcacatgcatcaccctatatgtcaaatggtctcttgagccatgtttggagacagtggaaggaccacacaccattgagcatattggatccaatattgaaagaaagttattcccaaattgaagtcactaaatgtattcaaattggtttactatgtgttcaagaaaataaaaacaatagacctactatgacaaaagttgtttcatatcttgatggccacacactcttgccatctccactgaaaccagcatttttcttgctggacaagatccatcaaaatatagctacacaacaTATTTCTGTGAATGAGATGTCTATAAGTACATATTGTGCTAGATAA 1719 0.1146 MCRGDVTNHTCQECVKTATQQITLRCPNSKDALIWYHECLVRYSNSCFFSTMEEWPRFDLLDYYNVTKNSTKEGSYGWLLAKTLSDAVGEAANAGPEGTMKFATKNATLSGSQSLYTLVQCTPDLSSKDCSKCLGDIMRDIPLCCLGKCAMVLYPSCTLMFGLSRFYRDVVALGVVGSNIGTQEPEPSGNKNSSSRPIVIVVILLILATLSFLQCYFLRRRARKRHYNILLRENFGRESVTLEGLQFELAIIKTATNNFSLENKIGKGGFGEVYKGILPCGRHIAVKRLSTSSQQGSVEFKNEILLIAKLQHKNLVELIGFCLDMQEKILIYEFMPNGSLDKFLFGTQQNSISWSKRYKIIEMIARGVLYLHEYSRLKIIHRDLKPSNILLDEHMNPKISDFGMARIVEIDQDRGKTKRIVGTWGYMSPEYIMFGQFSEKSDVFSFGVMVLEIITGKRNINSHASPYMSNGLLSHVWRQWKDHTPLSILDPILKESYSQIEVTKCIQIGLLCVQENKNNRPTMTKVVSYLDGHTLLPSPLKPAFFLLDKIHQNIATQHISVNEMSISTYCAR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01316 572 Pfam Salt stress response/antifungal 69 161 IPR002902 -
Gma20g01316 572 Pfam Salt stress response/antifungal 1 45 IPR002902 -
Gma20g01316 572 SUPERFAMILY Protein kinase-like (PK-like) 243 554 IPR011009 -
Gma20g01316 572 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Gma20g01316 572 ProSiteProfiles Protein kinase domain profile. 259 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01316 572 ProSiteProfiles Gnk2-homologous domain profile. 1 48 IPR002902 -
Gma20g01316 572 ProSiteProfiles Gnk2-homologous domain profile. 58 166 IPR002902 -
Gma20g01316 572 Gene3D Phosphorylase Kinase; domain 1 222 334 - -
Gma20g01316 572 Gene3D Transferase(Phosphotransferase) domain 1 335 535 - -
Gma20g01316 572 CDD STKc_IRAK 265 532 - -
Gma20g01316 572 SMART serkin_6 259 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01316 572 ProSitePatterns Protein kinases ATP-binding region signature. 265 287 IPR017441 GO:0005524
Gma20g01316 572 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 172 - -
Gma20g01316 572 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 184 558 - -
Gma20g01316 572 Pfam Protein kinase domain 260 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01316 572 Gene3D - 59 166 IPR038408 -
Gma20g01316 572 Gene3D - 1 48 IPR038408 -
Gma20g01316 572 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 184 558 - -
Gma20g01316 572 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01316 Gma-Chr20 40150231 40157047 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01316 1 546 Receptor kinase-like Gene Family AT4G05200 44.484 1.76e-159 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma20g01316 Pkinase 3.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01316 - - gsj:114402116 1149.81