Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01314 ATGGCCTTGATTCCTTCCATGATGCTGTTTTCATTTCTTTCTTTCCTTGTCATACTCAAATCTGAAGCCAACAACGACCAGCTACAATTCGTGTACCATTATTGCAACAACGAGTACGGAAACATTACCACCGAAAcctactcagacaaccggaataaccttttgtccaatatgtattatgacaaagaaaatgactacggcttctacaattcctcctatggacaagaccctgacaaagtttacgccatcggtttctgcagaggcgatgcaaatctagataagtgccgtagttgcctggaaaagtccgcagtccttctcagagagcggtgtccagtacagaaagaggggatcgggtggtttgacgagtgcatgttacgctacaccaaccactcaatatttGGTGTCATGGTAACTCAACCTAACAACATCATGTGCAACACAAAAAACGCCCCAAAGGATCCTAGATCGGCTACTGGTTTTGATCAAGTGGTCCACAACCTGTTGAACGAACTGAGAAACAGGACGACGACAGTGGCAGACCCAGAAAGTGATTCCAGTCGAAGTCGCAAGTTCTTCGCTGAAGGAGATGCTCCGGTTCAATCAAGCAATGTGACCATACATGCTCTGATTCAGTGCACACCTGATATTTCTAGTCAAAACTGTACTCGATGCTTGGAGCACGCTATGACGAATATTTTATATTGTGATGGAAAAAGGGGTGGTCGATATCTAGGACCAAGCTGTTCTGTTAGATATGAGATCTATCCCTTTTTTGAGCCCATAGTCCACCATGCACCACCACCACAACCTGCCACTCAGGTTACCACGACCACTGGGAAAGAAAAGAGCAACCCATCACGAACTATCATTGCTATAGTTGTGCCAGTCGTTGCCGTTGTCGTACTCCTGGTGGCCTTTACCTACAATTATTTAGGAGCGAGAAGACGAAGACAAAAACCTTTTCAAAGTGAAGGAGGCGAAGGTGAACTTGATAATGACATTAAAATAGACgagttgttgcaatttgactttgcaaccatcaaatttgcaactaataacttctctgatgcaaataagcttggccaaggtggatttggaattgtttataagggtacgctctctgatggacaagaaatagcaattaaaagattgtctatcaattctaaccaaggagaaacagaatttaagaatgaaattctgctaacagggaagcttcaacaccgaaacttagttagactgcttggcttttgtttttcaagaagagaaaggttattgatatatgaattcgttcccaataaaagccttgattatttcatatttgatccaaacaatcgtgtgaatttgaattgggaaagacgctataatattataaggggtattgctcgaggtcttctttaccttcatgaagattctcgattacaagttgttcatcgtgatctcaaaacaagtaacattttgttagatgaagagttgaaccctaaaatatcagattttggcatggcaagattatttgagatcaatcaaactcaagccagtacaaatacaattgtcgggacctttggatatatggctcctgaatacattaaacatggacagttttctatcaagtcagatgtctttagttttggcgttatgattctggaaatagtatgcggccaaagaaacagtcagattcgtgatagcgaagaaaacgcacaggatttattaagctttgcatggaacaattggaggggagggacagtttcaaatattAAAAGGTCGCCACGCCAGATAACTGCCGTCGCTGGCTGGAGAAGTAGTCCGCGGTGGCCACCACAGAAAGAGGCGATTGCATGGTTTGACCCGTGCATGCTACGCTACACAATATATGAAAAGAGGAACCCATCACGAACCATCATTGTGATAGTCGTACTCCTGGCCCTTATGTACAATTATTTAGGAGTGAGAAGACGAAGACGCCACAAAACTATCCAAACTTCCAATATTCTGATAATCGAGAGGACGATCAGGATGCCTGGTGTTTCTTCCATGCTTCTTTTCTTTCTATTTGTAATATTAATATCTCAAGTCAGTGCCTTAAGCGTAACctgtgattacagcgaggtcggaaattacacagcaaatagcacctataacaccaatctgaacacccttttatccactctctcttccaacacagaaattaattacggtttctacaacttctcacatggtcaaagcccagacagagtcaacgtcattggactctgcaggggagatctggcgccagatgagtgccgcagttgcctcaactatgccagaagcaatctcacgcaggattgtccaaaccagaaagaggcaattatacaacatagaaactgcatgttgcgctactcgaaccgcacaatatttggcaatccggaagttcaacctggtacttgtttgcggaacttatccaatgtaatgtacggggatgagttcaagcaagtgcttgcgaacttaatgaggaacctcaaaggtgtagctgcatcgggtgactctcgtcgtaagtatgctacggataatgtaactactggaaattttgaaaccatatatggtcttgtgcagtgcacccctgatttgtctgagacacaatgcaatgactgcttggacgagactatctcacaaatcccatattgttgtaatttaacgtactgtggtggaggtgttggacccagttgtaatattagatttcaaaactACCGCTTCTACAACCAGACGATTATGTTGGACCCAGAGATACCACCATCATGGCCAGCATCACCTCCTTTCGCCGacatttccccagaaacagaagttaaagaagatgaagttgaggatgaaattaaaattgccgagtcattgcaatttaacttcaacacaatacaagttgcttcagaagacttctctgattctaataaacttggacaaggtggatttggagctgtttacaggggtaggctctctaatgggcagatgattgcagttaaaaggttgtcaagagattctggccaaggagataccgaatttaagaatgaggtgcttttagtggccaagcttcagcaccgaaatttagttaggctacttggtttctgcttggaaggaaatgaaaggctacttgtctatgaatatgttcctaataaaagccttgattatttcatatttgcgttaaaactgatggatgtatatgcagatccaaacatgaaagcacaattggattggaaaagtcgctacaaaatcattagaggtatagctcgaggccttctatacctccatgaagattctcgactgcgtattatacatcgtgatctcaaagcaagcaacattctcttagacgaagagatgagtccgaaaatagcagattttggcatggcaagactggttttagtggatcaaactcaagcaaatacaagtagaattgttggaacctatggatatatggcacctgagtatgcaatgcatggacaattttcaatgaaatcagatgtctttagttttggtgtactagttcttgagatcataagcggccagaaaaacagtggcattcgtcatggggagaatgtagaggatctactgagcttc 3579 0.1459 MALIPSMMLFSFLSFLVILKSEANNDQLQFVYHYCNNEYGNITTETYSDNRNNLLSNMYYDKENDYGFYNSSYGQDPDKVYAIGFCRGDANLDKCRSCLEKSAVLLRERCPVQKEGIGWFDECMLRYTNHSIFGVMVTQPNNIMCNTKNAPKDPRSATGFDQVVHNLLNELRNRTTTVADPESDSSRSRKFFAEGDAPVQSSNVTIHALIQCTPDISSQNCTRCLEHAMTNILYCDGKRGGRYLGPSCSVRYEIYPFFEPIVHHAPPPQPATQVTTTTGKEKSNPSRTIIAIVVPVVAVVVLLVAFTYNYLGARRRRQKPFQSEGGEGELDNDIKIDELLQFDFATIKFATNNFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKNEILLTGKLQHRNLVRLLGFCFSRRERLLIYEFVPNKSLDYFIFDPNNRVNLNWERRYNIIRGIARGLLYLHEDSRLQVVHRDLKTSNILLDEELNPKISDFGMARLFEINQTQASTNTIVGTFGYMAPEYIKHGQFSIKSDVFSFGVMILEIVCGQRNSQIRDSEENAQDLLSFAWNNWRGGTVSNIKRSPRQITAVAGWRSSPRWPPQKEAIAWFDPCMLRYTIYEKRNPSRTIIVIVVLLALMYNYLGVRRRRRHKTIQTSNILIIERTIRMPGVSSMLLFFLFVILISQVSALSVTCDYSEVGNYTANSTYNTNLNTLLSTLSSNTEINYGFYNFSHGQSPDRVNVIGLCRGDLAPDECRSCLNYARSNLTQDCPNQKEAIIQHRNCMLRYSNRTIFGNPEVQPGTCLRNLSNVMYGDEFKQVLANLMRNLKGVAASGDSRRKYATDNVTTGNFETIYGLVQCTPDLSETQCNDCLDETISQIPYCCNLTYCGGGVGPSCNIRFQNYRFYNQTIMLDPEIPPSWPASPPFADISPETEVKEDEVEDEIKIAESLQFNFNTIQVASEDFSDSNKLGQGGFGAVYRGRLSNGQMIAVKRLSRDSGQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGNERLLVYEYVPNKSLDYFIFALKLMDVYADPNMKAQLDWKSRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDEEMSPKIADFGMARLVLVDQTQANTSRIVGTYGYMAPEYAMHGQFSMKSDVFSFGVLVLEIISGQKNSGIRHGENVEDLLSF 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01314 1193 ProSiteProfiles Protein kinase domain profile. 354 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01314 1193 Pfam Salt stress response/antifungal 813 907 IPR002902 -
Gma20g01314 1193 Pfam Salt stress response/antifungal 697 793 IPR002902 -
Gma20g01314 1193 Pfam Salt stress response/antifungal 145 254 IPR002902 -
Gma20g01314 1193 Pfam Salt stress response/antifungal 35 129 IPR002902 -
Gma20g01314 1193 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 672 921 - -
Gma20g01314 1193 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 12 584 - -
Gma20g01314 1193 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 939 1193 - -
Gma20g01314 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1098 1110 IPR008271 GO:0004672|GO:0006468
Gma20g01314 1193 ProSiteProfiles Gnk2-homologous domain profile. 138 257 IPR002902 -
Gma20g01314 1193 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Gma20g01314 1193 SUPERFAMILY Protein kinase-like (PK-like) 950 1177 IPR011009 -
Gma20g01314 1193 Gene3D Transferase(Phosphotransferase) domain 1 430 611 - -
Gma20g01314 1193 Gene3D Transferase(Phosphotransferase) domain 1 1046 1192 - -
Gma20g01314 1193 CDD STKc_IRAK 360 579 - -
Gma20g01314 1193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Gma20g01314 1193 SMART serkin_6 968 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01314 1193 SMART serkin_6 354 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01314 1193 Gene3D Phosphorylase Kinase; domain 1 323 429 - -
Gma20g01314 1193 Gene3D Phosphorylase Kinase; domain 1 933 1043 - -
Gma20g01314 1193 Pfam Protein kinase domain 355 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01314 1193 CDD STKc_IRAK 974 1177 - -
Gma20g01314 1193 ProSiteProfiles Protein kinase domain profile. 968 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01314 1193 Pfam Protein tyrosine and serine/threonine kinase 971 1177 IPR001245 GO:0004672|GO:0006468
Gma20g01314 1193 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Gma20g01314 1193 ProSiteProfiles Gnk2-homologous domain profile. 693 796 IPR002902 -
Gma20g01314 1193 Gene3D - 805 909 IPR038408 -
Gma20g01314 1193 Gene3D - 138 257 IPR038408 -
Gma20g01314 1193 Gene3D - 27 131 IPR038408 -
Gma20g01314 1193 Gene3D - 692 795 IPR038408 -
Gma20g01314 1193 ProSitePatterns Protein kinases ATP-binding region signature. 974 996 IPR017441 GO:0005524
Gma20g01314 1193 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 672 921 - -
Gma20g01314 1193 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 584 - -
Gma20g01314 1193 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 939 1193 - -
Gma20g01314 1193 ProSiteProfiles Gnk2-homologous domain profile. 802 909 IPR002902 -
Gma20g01314 1193 SUPERFAMILY Protein kinase-like (PK-like) 338 563 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01314 Gma-Chr20 39987745 40040748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01314 35 584 Receptor kinase-like Gene Family AT4G38830 45.730 3.69e-156 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma20g01314 PK_Tyr_Ser-Thr 9.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01314 - - gmx:100789002 1152.5