Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01313 ATGATCGTACCTATAGCTTCCAATATTCTGATAATCGAGAGGACGATCAGGATGCCTGGCGTTTCTTCCATGCTTCTTTTCTTTCTATTTGTAATATTAATATCTCAAGTCAGTGCCCAGTTAACCTGTGATTACAGCAAGGTCGGAAATTACACAGCAAATAGCACCTATAACACCAATCTGAACACCCTTTTATCCACTCTCTCTTCCAACACAGAAATTAATTACGGTTTCTACAACTTCTCACATGGTCAAAGCCCAGACAGAGTCAACGCCATTGGGCTCTGCAGGGGAGATGTGGAGCCAGATGAGTGCCGCAGTTGCCTCAACGATGCCAGAAGCAATCTCACACAAGATTGTCCAAACCAGAAAGAGGCAATTATACAATATGACAATTGCATGTTGCGCTACTCCAACCGCACAATATTTGGCAATCTGGAATTTCAACCTGGTTATTGTGTGCGGAACTTATCCAATGTAATGGACGGGGATCAGTCCAAGCAAGCGCTTGCGAACTTAATGGGGAAACTCAAAGGTGTAGCTGCATCGGGTGACTCTCGTCGTAAGTATGCTACGGATAATGTAACTACTGGAAATTTTGAAACCATATATGGTCTTGTGCAGTGCACCCCTGATTTGTCTGAGACACAATGCAATGATTGCTTGGATGAGACTATCTTAACAATCCCACATTGTTGTAATTTAACGTTCTGTGGTGGATCTATTGGACCCAGTTGTAATATTAGATTTGAAAACTACCGCTTCTACAACCAGACGACTATGTCGGACCCAGAGATACCACCATCATGGCCAGCATCACCTCCTTTCGCtgacatttccccagaaccagaagaaagtggcaacacaatagtaattgtcatctccatagttgtgccaactgttgttgtcgttttgctcatttgtctctgcctatatttaaggaggaggaaggctaggaaaaatcttgtaggcaagtccaactatcaatttactgatgaaattaaaattgccgagtcattgcaatttaacttcaacacaatacaagttgctacagaagacttctctgattctaataaacttggacaaggtggatttggagctgtttacaggggtaggctctctaatgggcagatgattgcagttaaaaggttgtcaagagattctggccaaggagataccgaatttaaaaatgaggtgcttttagtggccaagcttcagcaccgaaatttagttaggctacttggtttctgcttggaaggaaatgaaaggcttcttgtctatgaatatgttcctaataaaagccttgattatttcatatttgatccaaacatgaaagcacaattggattgggaaagtcgttacaaaatcattagaggtattgctcgaggccttctataccttcatgaagactctcgactgcgtgttatacatcgtgatctcatagcaagcaacattctcttagacgaagagatgaatccgaagatagcagattttggcatggcaagactgtttttggtggatcaaactcatgcaaatacaagaagaattgtcggaacctgtggatatatggcaccagaatatgcaatgcatggacaattttcagtgaaatcagatgtcttcagttttggtgtactagttcttgagattttatgcggccaaaaaaacaggggcattcatcatgcggagaatgttgaggatctactaagtttcgcatggagaagttggaaggagcagacagctataaatattgtagatccatcattaaacaacaattcacgaaatgaaatgatgagatGTCAGATGGGTAAGTGGGCTGAGCTGGTGGCCCAAGAAGGAATTGTCCATGCCAGCAATTTCAGACAAACGACAGAGGAAGGGGGTCGTTTCACCTTGAGTTATGTCTTATGA 1908 0.2186 MIVPIASNILIIERTIRMPGVSSMLLFFLFVILISQVSAQLTCDYSKVGNYTANSTYNTNLNTLLSTLSSNTEINYGFYNFSHGQSPDRVNAIGLCRGDVEPDECRSCLNDARSNLTQDCPNQKEAIIQYDNCMLRYSNRTIFGNLEFQPGYCVRNLSNVMDGDQSKQALANLMGKLKGVAASGDSRRKYATDNVTTGNFETIYGLVQCTPDLSETQCNDCLDETILTIPHCCNLTFCGGSIGPSCNIRFENYRFYNQTTMSDPEIPPSWPASPPFADISPEPEESGNTIVIVISIVVPTVVVVLLICLCLYLRRRKARKNLVGKSNYQFTDEIKIAESLQFNFNTIQVATEDFSDSNKLGQGGFGAVYRGRLSNGQMIAVKRLSRDSGQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGNERLLVYEYVPNKSLDYFIFDPNMKAQLDWESRYKIIRGIARGLLYLHEDSRLRVIHRDLIASNILLDEEMNPKIADFGMARLFLVDQTHANTRRIVGTCGYMAPEYAMHGQFSVKSDVFSFGVLVLEILCGQKNRGIHHAENVEDLLSFAWRSWKEQTAINIVDPSLNNNSRNEMMRCQMGKWAELVAQEGIVHASNFRQTTEEGGRFTLSYVL 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01313 635 ProSiteProfiles Protein kinase domain profile. 354 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01313 635 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Gma20g01313 635 ProSiteProfiles Gnk2-homologous domain profile. 39 142 IPR002902 -
Gma20g01313 635 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 600 - -
Gma20g01313 635 SUPERFAMILY Protein kinase-like (PK-like) 338 596 IPR011009 -
Gma20g01313 635 Gene3D Transferase(Phosphotransferase) domain 1 430 613 - -
Gma20g01313 635 Pfam Protein tyrosine and serine/threonine kinase 357 556 IPR001245 GO:0004672|GO:0006468
Gma20g01313 635 Gene3D Phosphorylase Kinase; domain 1 316 429 - -
Gma20g01313 635 Pfam Salt stress response/antifungal 159 253 IPR002902 -
Gma20g01313 635 Pfam Salt stress response/antifungal 43 139 IPR002902 -
Gma20g01313 635 Gene3D - 38 141 IPR038408 -
Gma20g01313 635 Gene3D - 150 255 IPR038408 -
Gma20g01313 635 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 19 600 - -
Gma20g01313 635 ProSiteProfiles Gnk2-homologous domain profile. 148 255 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01313 Gma-Chr20 39926316 39930835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01313 18 599 Receptor kinase-like Gene Family AT4G21410 51.650 0.0 571
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma20g01313 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01313 - - gmx:100787411 1017.68