Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01307 ATGGATATGTTTAAGCAGAAGGAGAAGAAGAAAAACACAGGCCGCAAAAAGATTGAGATCAAGAAGCTTGACAAGGGTAGCAACAAGCAAGTGACGTTCTCAAAAAGAAGAACAGGACTGTTCAAAAAAGCCAGCGAACTCTGCATTTTATGCAATGTTTATGTAGCCATAATTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGCCATCCAGATATCGACAGCATAATTGGTCGCTATCTCAAAGGAGACAATGCAGAGTTTGAATCAGCAAAGTCGTCAAAAGGAAAATCAGTGTCATGTGAGGAACGTAACAGGCAATATGAAGAGGCGATGAAGAAGTTGGAGTTGGAAAAGAAGAACTTGGCACAAATTGAAGTTTTGACTAAAGGTTGGAACAGAAGTTGGTGGGACGATCCCATTGATCAGATGACTGATCTGCAGTTGGAACAGTTTATGGTGTCCATTTACGAGTTAAGGAAAAAACTAGCAGAAAGGGCAGGTGAATTGATGATGTAA 522 0.4042 MDMFKQKEKKKNTGRKKIEIKKLDKGSNKQVTFSKRRTGLFKKASELCILCNVYVAIIVFSPADKLFCFGHPDIDSIIGRYLKGDNAEFESAKSSKGKSVSCEERNRQYEEAMKKLELEKKNLAQIEVLTKGWNRSWWDDPIDQMTDLQLEQFMVSIYELRKKLAERAGELMM 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01307 173 PANTHER MADS BOX PROTEIN 10 173 - -
Gma20g01307 173 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Gma20g01307 173 Gene3D - 26 96 IPR036879 GO:0003677|GO:0046983
Gma20g01307 173 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Gma20g01307 173 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Gma20g01307 173 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Gma20g01307 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 69 IPR002100 GO:0003677|GO:0046983
Gma20g01307 173 CDD MADS_MEF2_like 14 84 IPR033896 GO:0000977|GO:0045944
Gma20g01307 173 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Gma20g01307 173 SUPERFAMILY SRF-like 14 88 IPR036879 GO:0003677|GO:0046983
Gma20g01307 173 Coils Coil 99 129 - -
Gma20g01307 173 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01307 Gma-Chr20 39796741 39797262 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01307 14 165 Type I MADS-box Gene Family AT2G24840 41.667 8.98e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma20g01307 SRF-TF 7.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01307 - - gmx:100782074 343.199