Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01303 ATGTCTGGCCCAAAGAAAAGCCGTggccgccaaaagatcgagatgaagaaaatgagcaacgagagcaaccttcaagtcaccttctccaagcgccgcagcgggcttttcaagaaagccagtgagctttgcactctctgtggcgctgacgtggctctcattgttttctctcccggcgagaaggttttctccttcggccaccccaacgtggacgccgtcatagaccgctatctcgagcgggccccaccgacggagtctttcatggaggctcaccgcatggcccacgtgcgtgacctcaacgcgcagctcactcagatcagcaaccaccttgacgccgggaggaagcgcgccgaggagctgaatctcatgaagaaggaagcccaggcccacctatggtgggcccggcccgtggatgggatgagcatggcccagatgaagcagttcaaggcggcgttggaggagctgaagaagcaGGTGGCGCGGCTTGCTGATAGGGCTATGCTTCAGAGTGTTACAAACCCTACCCATGAGTTTTTCCCTGCTGCTGGGGTTTCTTCCTCTTCCTCTTCCAATTCCAATTCCAATTCCAACCCACTGTCACCTCAGGTGTTCTCCCCACACCTGATTCAGCCACCAATGCTTCAGAACTTTATGAGCATGATGCCGCGCCACCATGGGTTTAATTACATGGGAATGGGAGGATATGGACCTGCTGCAGGTTTCTTTTGA 726 0.1928 MSGPKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSFGHPNVDAVIDRYLERAPPTESFMEAHRMAHVRDLNAQLTQISNHLDAGRKRAEELNLMKKEAQAHLWWARPVDGMSMAQMKQFKAALEELKKQVARLADRAMLQSVTNPTHEFFPAAGVSSSSSSNSNSNSNPLSPQVFSPHLIQPPMLQNFMSMMPRHHGFNYMGMGGYGPAAGFF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01303 241 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Gma20g01303 241 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Gma20g01303 241 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Gma20g01303 241 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Gma20g01303 241 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Gma20g01303 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 202 - -
Gma20g01303 241 Coils Coil 144 164 - -
Gma20g01303 241 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Gma20g01303 241 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Gma20g01303 241 MobiDBLite consensus disorder prediction 1 21 - -
Gma20g01303 241 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Gma20g01303 241 PANTHER MADS BOX PROTEIN 7 202 - -
Gma20g01303 241 Gene3D - 88 176 - -
Gma20g01303 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01303 Gma-Chr20 39755982 39756707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01303 5 172 Type I MADS-box Gene Family AT5G60440 54.857 2.93e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma20g01303 SRF-TF 9.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01303 - - gmx:100779916 437.958