Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01278 ATGGCTACGGCGGTGCTCACGACGGGGCGAGAGTTGTCGAACCCTCCATCCGACGGCATCACCAATCTTCGATTCTCCAACCACAGCGATCATCTTTTGGTGTCCTCATGGGACAAGAGCGTGCGCTTGTATGATGCGAGTGCCAATGTGTTGAGAGGAGAGTTTATGCACGCTGGCCCCGTCCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGCCGCCGCCGACAACACTGTTAGACGGCTTGTCTTCAGCTCTAATAAAGAGGATATTCTGGGAAGGCATGATGCACCCGTTCGTTGCATTGAGTATTCATATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTAAAATGTTGGGACCCTAGAGGTGCAAGTGGCCAAGAGCGCACACTTGTTGGGACATATCCACAACCTGAGCGTGTCTACTCTCTCTCACTGGTTGGACATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGAAACATGTCTCAACCGGAACAAAGAAGAGAATCCTCACTGAAATACCAAACCAGATGTGTGCGCTGTTACCCAAATGGAACAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGCTATGGAATTCTTCGACCTCTCAGAGGCTAGCCAAGCAAAAAAatatgcttttaagtgtcacagaaaatcagaggctggaagggacatagtctatcctgtgaatgcaattgctttccaccccatATATGGAACATTTGCCACAGGAGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCAAAATATCCTACCAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTCTTGGCTGTTGCATCAAGTTACACATTCGAAGAAGGGCCTAAAGCAGGAACTAAAGCCGACGAACAAGATGCTATCTACGTACGCAGTGTAAACGAGATTGAGGTCAAGCCGAAGCCCAAAGTATATCCCAATCCTCCAGCTTGA 1035 0.4522 MATAVLTTGRELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTVRRLVFSSNKEDILGRHDAPVRCIEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGPKAGTKADEQDAIYVRSVNEIEVKPKPKVYPNPPA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01278 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
Gma20g01278 344 SUPERFAMILY WD40 repeat-like 16 303 IPR036322 GO:0005515
Gma20g01278 344 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Gma20g01278 344 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Gma20g01278 344 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Gma20g01278 344 Pfam WD domain, G-beta repeat 228 269 IPR001680 GO:0005515
Gma20g01278 344 Pfam WD domain, G-beta repeat 18 45 IPR001680 GO:0005515
Gma20g01278 344 Pfam WD domain, G-beta repeat 94 126 IPR001680 GO:0005515
Gma20g01278 344 Gene3D - 7 338 IPR015943 GO:0005515
Gma20g01278 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 278 IPR001680 GO:0005515
Gma20g01278 344 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 3 339 - -
Gma20g01278 344 PANTHER MRNA EXPORT FACTOR AND BUB3 3 339 - -
Gma20g01278 344 SMART WD40_4 221 269 IPR001680 GO:0005515
Gma20g01278 344 SMART WD40_4 48 85 IPR001680 GO:0005515
Gma20g01278 344 SMART WD40_4 134 170 IPR001680 GO:0005515
Gma20g01278 344 SMART WD40_4 87 126 IPR001680 GO:0005515
Gma20g01278 344 SMART WD40_4 8 45 IPR001680 GO:0005515
Gma20g01278 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01278 Gma-Chr20 39491976 39494932 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01278 76 302 U-box Gene Family AT2G33340 24.242 9.25e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01278 K02180 - gmx:100820541 678.322