Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01274 ATGAGCTGCAATGGTTGTCGAGTCCTCAGAAAGGGTTGCAGTGACGACTGCATGCTACGACATTGCCTAGTGTGGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTCGTCGCCAAGTTCTTCGGCCGTGCCACTCTCATGTCTTTCCTTTCCTCCGTACCCTCCAACCAAAGATCTGCTTTGTTTCAGTCACTGCTTTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGCTGTTGTGGACTGGGAACTGGCACCTCTGCCAAATGGGCGTGGAGAAAGTGCTCCGAGGTGGTGCTGCATTGACCCCACTCCCTCAAGTAATAACAAGTGTGGAGAGAGTGATGGTTGGAGGTGAAATAATAATGTGTCACCAGCCCAAGAAGCAACATGTGGGGACACCCCCTGAGGAGGAATCCGAGATCTCCACGTTCGGAAGTAGACCACTGGATTCTGCCCCTCAAAGTCAAACCAACCTCCTTACACTATTCTTCTAA 516 0.5155 MSCNGCRVLRKGCSDDCMLRHCLVWIENPQAQAHATLFVAKFFGRATLMSFLSSVPSNQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLRGGAALTPLPQVITSVERVMVGGEIIMCHQPKKQHVGTPPEEESEISTFGSRPLDSAPQSQTNLLTLFF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01274 171 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Gma20g01274 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 171 - -
Gma20g01274 171 PANTHER LOB DOMAIN PROTEIN 1 171 - -
Gma20g01274 171 MobiDBLite consensus disorder prediction 133 159 - -
Gma20g01274 171 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01274 Gma-Chr20 39450480 39452273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01274 1 116 AS2 family AT5G67420 71.552 5.38e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma20g01274 LOB 6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01274 - - gmx:100816269 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02437 10 51923030 51924283 Gma20g01274 20 39450480 39452273 GST
Gma01g01956 01 55016586 55017936 Gma20g01274 20 39450480 39452273 PCT
Gma11g00450 11 3757934 3759228 Gma20g01274 20 39450480 39452273 PCT