Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01272 ATGGCTTCTGCGGTGCCCGCGACGGGGCGAGAGTTGTCGAATCCTCCATTGGACGGCATCACCAATCTTCGATTCTCCAATCACAGCGATCATCTCCTTGTGTCCTCATGGGACAAGAGCGTGAGGTTGTATGATGCCAGTGCCAATGTCTTGAGAGGAGAGTTTATGCACGCTGGTCCCGTCCTCGATTGCTGCTTCCACGATGATTCCTCCGGCTTCAGTGTCGCCGCCGACAACACTGTTAGACGGCTTGTCTTCAGCTCTAACAAAGAGGATATTCTGGGAAGGCATGATGCCCCTGTTCGTTGTGTTGAGTACTCATATGCCGCAGGGCAATTGATCACTGGTAGTTGGGACAAGACCCTGAAATGTTGGGACCCTAGAGGTGCAAGTGGCCAAGAGCGCACACTTGTTGGGACATATCCACAAGCCGAGCGTGTCTACTCTCTCTCACTGGTTGGACATCGTCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGAAACATGTCTCAACCTGAACAAAGAAGAGAATCTTCTTTAAAATATCAAACCAGATGTGTGCACTGTTACCCTAATGGAACAGGATATGCACTTAGTTCTGTTGAGGGCCGGGTTGCAATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCAAAAAAatatgctttcaagtgtcacaggaaatcagaagctggaagggacattgtctatcctgtaaatgcaattgcattccaccccatATATGGTACATTTGCCACGGGAGGTTGTGACGGGTATGTTAACGTATGGGACGGAAACAATAAGAAGAGGCTATACCAGTACTCAAAATATCCAACTAGCGTTGCAGCACTTTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACATTCGAAGATGGACCTAAAAGCCAAGAACAAGATGCTATCTTTGTTCGTAGTGTAAACGAGATTGAGGTCAAGCCGAAACCCAAAGTCTATCCCAATCCACCAGTTTGA 1023 0.4399 MASAVPATGRELSNPPLDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSVAADNTVRRLVFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQAERVYSLSLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVHCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEDGPKSQEQDAIFVRSVNEIEVKPKPKVYPNPPV 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01272 340 Pfam WD domain, G-beta repeat 19 45 IPR001680 GO:0005515
Gma20g01272 340 Pfam WD domain, G-beta repeat 94 126 IPR001680 GO:0005515
Gma20g01272 340 Pfam WD domain, G-beta repeat 228 269 IPR001680 GO:0005515
Gma20g01272 340 PANTHER MRNA EXPORT FACTOR AND BUB3 4 335 - -
Gma20g01272 340 Gene3D - 3 334 IPR015943 GO:0005515
Gma20g01272 340 SMART WD40_4 87 126 IPR001680 GO:0005515
Gma20g01272 340 SMART WD40_4 48 85 IPR001680 GO:0005515
Gma20g01272 340 SMART WD40_4 221 269 IPR001680 GO:0005515
Gma20g01272 340 SMART WD40_4 8 45 IPR001680 GO:0005515
Gma20g01272 340 SMART WD40_4 134 170 IPR001680 GO:0005515
Gma20g01272 340 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Gma20g01272 340 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Gma20g01272 340 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Gma20g01272 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 244 278 IPR001680 GO:0005515
Gma20g01272 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 126 IPR001680 GO:0005515
Gma20g01272 340 SUPERFAMILY WD40 repeat-like 16 303 IPR036322 GO:0005515
Gma20g01272 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 126 - -
Gma20g01272 340 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 4 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01272 Gma-Chr20 39438739 39442503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01272 74 309 U-box Gene Family AT2G33340 25.000 1.30e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01272 K02180 - gmx:100818414 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02439 10 51933248 51936512 Gma20g01272 20 39438739 39442503 GST