Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01252 ATGGCTAGTCCAACTGGAGAATTGACAAGCCATAACGACAGTACCGCTGAGCCGATGGCAACTGAACAATGTGAATTGTCTGAAAAAACGCCTCAGATAGGATCTGAAGGTTTAGAGAGGGAACAAAAGGAGCTTCTTACCGAGTTAACCAGTTTTGTTATTGACGAAAAATCAAATCAAGTTTCTGCTGATGTGACGGAGAATTCTGTTATTCAACTGCCTGCACCGCCTCAACATGACTTTGAAAAGAATTGCCAGACTGTAGAAGGGTCATGCCTTGAACAAAGTACCGTCGAACAAGTCTCTGTTGATTTATCTAATGATAAATCTGAAAACAAATGCAAGCCATTGTCTGAAAATGTTCAAAGTGAACCCGTAGAATCCATTCCTGCCTTCGTCGTTGACGGGCAAATGCAATCCAGTCCAGCTCAAGCTAATATGAGTTCTGTGAATGAATTGTTGGATCAACCTTCTGGAGATGTTGTGAACAATATTACCAATTGTTCAGAAAAAATGTCTAATAGCCCAAGTCATTCGCAATCGAGGCGCAAGGGTAAAAGGAACTCTAAATTATTGAAGAAGAAGTATATGCTAAGGTCGTTAGGAAGCAGTGGCAGAGCTTTGCGGTCAAGAACAAAAGAAAAACCCAAGGAACCTGAACCAACTAGTAATTTGGTTGATGGTAATAGTAATGATGGAGTTAAGAGGAAAAGTGGTAGGAAGAAGAAAAAGAGAAGAGAAGAGGGAATAACTGATCAGTTTTCTAGAATCAGATCTCACTTAAGATATTTATTAAATCGAATAAGCTATGAAAACAGCTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATACAGTATGGAAAAGTTAAAGCCTGAGAAGGAGCTTCAGCGGGCTAAGTCTGAAATTCTTCGACGCAAATTGAAAATTAGGGATCTATTTCGAAATTTGGATTCATTGTGTGCTGAAGGAAAGTTTCCAGAATCTTTGTTTGATTCCGCAGGAGAGATTGACAGTGAGGATATATTTTGTGCAAAATGCCAGTCCAAAGAGTTGAGCACTAATAATGATATAATTCTTTGTGATGGTGTTTGTGATCGTGGATTTCACCAGCTCTGTTTGGATCCTCCGTTGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTTGGAACAAGTCTTTCTATTAGTGACACCTGGGAGAGAGTCTTTCCTGAAGCAGCATCATTTGCTGGAAATAATATGGATAACAACTTGGGACTTCCTTCTGATGATTCTGATGATGATGATTATAATCCTAATGGTTCAGATGATGTGAAAATTGAAGGGGATGAGTCAAGTTCTGATGAATCCGAGTATGCTTCTGCTTCTGAGAAATTGGAGGGTGGTTCACATGAGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGATCCTGATGCTCCAGATGTTGACTGTAAGGTCAATGAAGAAAGTTCAAGCTCTGATTTCACATCTGATTCCGAGGATCTTGCTGCTGCATTTGAGGATAACACATCCCCTGGACAGGATGGTGGCATCAATTCTAGCAAGAAAAAGGGTAAAGTTGGTAAGCTATCTATGGCTGATGAACTGTCATCTTTACTAGAGCCAGATTCTGGTCAAGGGGGTCCCACTCCTGTTTCTGGGAAAAGACATGTGGAAAGGTTGGACTACAAAAAGCTGTATGAGGAGACGTACCACAGTGATACTAGTGATGATGAAGATTGGAATGACGCAGCTGCTCCAAGTAGAAAAAAGAAACTCACTGGCAATGTGACTCCAGTGTCACCAAATGCAAATGCTTCAAATAATTCTATACATACTCTTAAGAGAAATGCTCATCAGAATAAAGTTGAAAATACAAATAGTTCACCCACTAAATCCCTTGATGGCCGTTCGAAATCTGGTTCCAGGGATAAAAGGTCTGGATCTTCAGCACACAAAAGACTAGGAGAAGCCGTAGTTCAGAGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAAGCACAAAAGAAAGCCTGGCACAAGAACTTGGACTTACTTATCAGCAGGTTGCCAAATGGTTCGACAATACACGTTGGAGCTTCCGGCATTCATCACAAATGGAAACCAATTCTGGTAGAAATGCTTCACCGGAAGCTACCGATGGCAGGGCTGAAAATGAGGGGGAGAAGCAATGTGAATCAATGTCTCCGGAGGTCAGTGGAAAAAACTCTAAAACCACAAGCTCTAGAAAACGGAAGCATTTGTCAGAACCCCTATCTGAAGCACAGCTGGATATCAATGGCTTAGCAACAAGTTCACCAAATGTTCATCAAACGCAAGTAGGCAATAAAATGAAGACAAGGAAAAGGAAATGA 2463 0.4101 MASPTGELTSHNDSTAEPMATEQCELSEKTPQIGSEGLEREQKELLTELTSFVIDEKSNQVSADVTENSVIQLPAPPQHDFEKNCQTVEGSCLEQSTVEQVSVDLSNDKSENKCKPLSENVQSEPVESIPAFVVDGQMQSSPAQANMSSVNELLDQPSGDVVNNITNCSEKMSNSPSHSQSRRKGKRNSKLLKKKYMLRSLGSSGRALRSRTKEKPKEPEPTSNLVDGNSNDGVKRKSGRKKKKRREEGITDQFSRIRSHLRYLLNRISYENSLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILRRKLKIRDLFRNLDSLCAEGKFPESLFDSAGEIDSEDIFCAKCQSKELSTNNDIILCDGVCDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCMDLVNDSFGTSLSISDTWERVFPEAASFAGNNMDNNLGLPSDDSDDDDYNPNGSDDVKIEGDESSSDESEYASASEKLEGGSHEDQYLGLPSEDSDDGDYDPDAPDVDCKVNEESSSSDFTSDSEDLAAAFEDNTSPGQDGGINSSKKKGKVGKLSMADELSSLLEPDSGQGGPTPVSGKRHVERLDYKKLYEETYHSDTSDDEDWNDAAAPSRKKKLTGNVTPVSPNANASNNSIHTLKRNAHQNKVENTNSSPTKSLDGRSKSGSRDKRSGSSAHKRLGEAVVQRLHKSFKENQYPDRSTKESLAQELGLTYQQVAKWFDNTRWSFRHSSQMETNSGRNASPEATDGRAENEGEKQCESMSPEVSGKNSKTTSSRKRKHLSEPLSEAQLDINGLATSSPNVHQTQVGNKMKTRKRK 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01252 820 ProSitePatterns Zinc finger PHD-type signature. 345 396 IPR019786 -
Gma20g01252 820 MobiDBLite consensus disorder prediction 621 663 - -
Gma20g01252 820 ProSiteProfiles Zinc finger PHD-type profile. 342 399 IPR019787 -
Gma20g01252 820 MobiDBLite consensus disorder prediction 794 811 - -
Gma20g01252 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 401 IPR013083 -
Gma20g01252 820 MobiDBLite consensus disorder prediction 431 706 - -
Gma20g01252 820 MobiDBLite consensus disorder prediction 154 179 - -
Gma20g01252 820 MobiDBLite consensus disorder prediction 1 38 - -
Gma20g01252 820 MobiDBLite consensus disorder prediction 732 820 - -
Gma20g01252 820 MobiDBLite consensus disorder prediction 732 746 - -
Gma20g01252 820 Gene3D - 675 745 - -
Gma20g01252 820 MobiDBLite consensus disorder prediction 154 251 - -
Gma20g01252 820 CDD homeodomain 687 734 IPR001356 GO:0003677
Gma20g01252 820 PANTHER HOMEOBOX PROTEIN HAT3.1 124 781 - -
Gma20g01252 820 CDD PHD_PRHA_like 344 396 IPR045876 -
Gma20g01252 820 SUPERFAMILY FYVE/PHD zinc finger 334 402 IPR011011 -
Gma20g01252 820 MobiDBLite consensus disorder prediction 1 30 - -
Gma20g01252 820 MobiDBLite consensus disorder prediction 664 702 - -
Gma20g01252 820 Pfam PHD-finger 344 399 IPR019787 -
Gma20g01252 820 MobiDBLite consensus disorder prediction 180 194 - -
Gma20g01252 820 MobiDBLite consensus disorder prediction 582 614 - -
Gma20g01252 820 Pfam Homeodomain 685 729 IPR001356 GO:0003677
Gma20g01252 820 ProSiteProfiles 'Homeobox' domain profile. 673 733 IPR001356 GO:0003677
Gma20g01252 820 SUPERFAMILY Homeodomain-like 675 736 IPR009057 -
Gma20g01252 820 SMART PHD_3 344 397 IPR001965 -
Gma20g01252 820 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 124 781 - -
Gma20g01252 820 SMART HOX_1 675 737 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01252 Gma-Chr20 39293370 39301230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01252 252 730 Homeobox Transcription Factor Family AT3G19510 49.804 1.27e-136 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gma20g01252 PHD 1.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01252 - - gmx:100811458 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02457 10 52058987 52066828 Gma20g01252 20 39293370 39301230 GST