Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01217 ATGGCAATTCAGCACCACAATGAACAACTAGAGCATAATGAAAATGTCTCATCTGTCCTTGATGCCCTTTACTGCGATGAAGGAAAGTGGGAGGATGAAGAGGAGGAGGAAGAAGATAATGAAGAAAGTGAAGTAACAACAAACACTGGAACTTCTCTTTTCCCTCTGCTCATGTTGGAGCAAGACTTGTTCTGGGAAGATGAGGAACTAAACTCTCTCTTTTCCAAAGAGAAGGTTCAACATGAAGAAGCCTATGACTATAACAATCTGAACAGTGATGATAATAGCAATGATAACAATAATAATAACAATAATGTGCTTTTGGACTCTTGTCTCTCTCAGCCTCGTCGTGAGGCAGTGGAATGGATACTGAAAGTCAATGCTCACTATGGATTCTCTGCTCTCACTGCAACACTGGCCGTTACTTACCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGGGAGAAGCCATGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGACACAAAGTATGTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTCCTGGTGCTGTCCACCCTCAAATGGAAGATGCACCCCGTGACCCCTCTCTCCTTTCTAGATCACATTATAAGAAGGCTTGGATTGAAAACACATCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTTTGTCTGTGCTTTTAGATTCAAGATTTGTTGGTTGTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTAAACACAATGGTGGGATGGAATACAAAAATCAGCTTCTGAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGTTATAATGCCATTCTCCAACTCTCAAATGTCAATAATTATGGTCATAACAACAACACTAGCAAGCGCAAGTATGAGCAAATCCCAAGCAGCCCAAGTGGCGTTATTGATGCTGCATTTTGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTATATTCACCACCAGAGCCTCTCTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAAATTGTCACCACTTAACCGGGTCATTGTCGGAATTGTTGGCACCTCTCCTTAA 1182 0.4281 MAIQHHNEQLEHNENVSSVLDALYCDEGKWEDEEEEEEDNEESEVTTNTGTSLFPLLMLEQDLFWEDEELNSLFSKEKVQHEEAYDYNNLNSDDNSNDNNNNNNNVLLDSCLSQPRREAVEWILKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYVFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLKTHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIKHNGGMEYKNQLLSVLKISKEKVDECYNAILQLSNVNNYGHNNNTSKRKYEQIPSSPSGVIDAAFCSDGSNDSWAVGSSLYSPPEPLFKKSRTQGQQMKLSPLNRVIVGIVGTSP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01217 393 CDD CYCLIN 116 208 IPR013763 -
Gma20g01217 393 Pfam Cyclin, N-terminal domain 113 215 IPR006671 -
Gma20g01217 393 SUPERFAMILY Cyclin-like 219 329 IPR036915 -
Gma20g01217 393 SMART cyclin_7 121 209 IPR013763 -
Gma20g01217 393 Pfam Cyclin, C-terminal domain 218 330 IPR004367 -
Gma20g01217 393 SMART Cyclin_C_2 218 347 IPR004367 -
Gma20g01217 393 PANTHER CYCLINS 42 369 IPR039361 -
Gma20g01217 393 PANTHER CYCLIN D3.1 PROTEIN 42 369 - -
Gma20g01217 393 MobiDBLite consensus disorder prediction 30 51 - -
Gma20g01217 393 ProSitePatterns Cyclins signature. 116 147 IPR006671 -
Gma20g01217 393 Gene3D - 217 308 - -
Gma20g01217 393 Gene3D - 110 216 - -
Gma20g01217 393 SUPERFAMILY Cyclin-like 109 216 IPR036915 -
Gma20g01217 393 MobiDBLite consensus disorder prediction 30 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01217 Gma-Chr20 39023711 39026146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01217 1 327 Core Cell Cycle Gene Families AT4G34160 54.848 6.95e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01217 K14505 - gmx:547740 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02487 10 52256917 52258977 Gma20g01217 20 39023711 39026146 GST
Gma01g01926 01 54777639 54778932 Gma20g01217 20 39023711 39026146 PCT
Gma11g00479 11 4013612 4015682 Gma20g01217 20 39023711 39026146 PCT