Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01216 ATGGATTCAGTGCCTGCTGATGTGTCTAATTCACATCCTATCAATGAACCGTCGAATTCTCCTCCGGCTGAAGAGACCGACAGACAAGCTTCTGCTTCTGTAGCCTCCAGGCAAGATAATTCTCCACATGAGGCATCACCTAGGCTATCTCCCACGGGCATATCGTCCTGGGCCAAAAACTTGAAAATTTCTCAGCCATTTTCTGGCAACCAAGACGACTCATCAAGTGGAAATGTTGGGAAATCAACTTTTTCACGCATCACAAGTAATTTCGGATTGAGGTTGTCTCCAAAGTCTCCTGTAGCAGATGACAGTTCCAATGAAACAGCTGGACAATCTAATTTGTTTGGAACTATTACGAAAGGCCTGGTCGACTCTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCACAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGCGACATGAGCTCTGGGTTTTTCGGCTATGTTGAGGGATTTTACAGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAAGTTTATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCACAATTGCCCACCAATTCAACTGATTATATCATTCTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACAGGGTTGATGATTTCTAGTCTTCTAGTATTCTTAAAGTTCTTCCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTGACTTACTTTAATGGTGAAAACCCACCGGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCTCAGATGCCCTTACTGGATTAGGCCCTCTATAACCGTCTCAGATCACAGTGGTGTGTTGTTCTCAACCAAAAAGCATCTGAGAACCAGGGAGCTTTTGCCAGAAGATTTTTGGTTTAGTGCGCCAAAAAAGGGAGTGATGGTCTTTGCTTTGCCGGGAGAGCCTGGCCTTACCGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAGTATTGAACACCAGTGATCTGGATGGCTTTGACAAGAGAAAATTGCCTTCTCCGGGATTTATGGTTGAGGTTGTGCTGGTGGATTATAATGGCAATGATGTAACTTCTAAAACTGAAACTACTACAAAGAAATCAGATGAGAGTTCAAGTAACAATCCTGCCAGTTCCGCCCCAGTGGAAAGGAGCACCACCCCTGCACAGAATGCAGACAAAGAATCAGATAGTCATGATAAAGATGACGTGTTTTCAGATGGCGAGGCAGAGCAATCTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTACAAATGACACCAGAATCTCCGAATCAAACAGAGTTTCAAATGAAATTGCAAATTTATCACATGCAACAGAGCAAGTTTCCTTGGGAAACAAGAGCTCTACGCCAATTCGTCATGCTAGTGAGCCAGGAAGTAATGTTGATGGAAAAACAGTGTCCAGTCTCGAGGTGCCCAGTGCAGAAAGTGAGTTTAAGGCCATGGCTGCTGATGCTTCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGATTGA 1872 0.4274 MDSVPADVSNSHPINEPSNSPPAEETDRQASASVASRQDNSPHEASPRLSPTGISSWAKNLKISQPFSGNQDDSSSGNVGKSTFSRITSNFGLRLSPKSPVADDSSNETAGQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLVFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLLRCPYWIRPSITVSDHSGVLFSTKKHLRTRELLPEDFWFSAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFMVEVVLVDYNGNDVTSKTETTTKKSDESSSNNPASSAPVERSTTPAQNADKESDSHDKDDVFSDGEAEQSASSRSKQTKAPSEAVETVTNDTRISESNRVSNEIANLSHATEQVSLGNKSSTPIRHASEPGSNVDGKTVSSLEVPSAESEFKAMAADASVFTFGDDEDYESD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01216 623 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Gma20g01216 623 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Gma20g01216 623 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 17 623 - -
Gma20g01216 623 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 17 623 - -
Gma20g01216 623 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Gma20g01216 623 MobiDBLite consensus disorder prediction 517 590 - -
Gma20g01216 623 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Gma20g01216 623 MobiDBLite consensus disorder prediction 465 590 - -
Gma20g01216 623 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Gma20g01216 623 MobiDBLite consensus disorder prediction 1 54 - -
Gma20g01216 623 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
Gma20g01216 623 MobiDBLite consensus disorder prediction 501 516 - -
Gma20g01216 623 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Gma20g01216 623 MobiDBLite consensus disorder prediction 476 500 - -
Gma20g01216 623 SMART PTEN_C2_2 331 459 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01216 Gma-Chr20 39010040 39016288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01216 39 623 Protein tyrosine phosphatase (PTP) family AT3G19420 68.552 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01216 K01110 - gmx:100799214 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02488 10 52267111 52276757 Gma20g01216 20 39010040 39016288 GST
Gma01g01924 01 54763914 54771491 Gma20g01216 20 39010040 39016288 PCT
Gma11g00481 11 4023319 4030308 Gma20g01216 20 39010040 39016288 PCT