Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01214 ATGGCGACACTCTCGGAGACCTACGCGTGCGCACCCTCCACGGAGCGCGGTCGCGGCATCCTCATCTCCGGCGATGCCAAAACGAACAACATTCTCTACTGCACGGGCCGATCGGTCATAATCCGCAACCTCGACAACCCGCTGCAGGTGTGGGTGTACTGCGAGCATGCCTACCCCGTCACGGTGGCGCGCTACTCCCCCAACGGCGAGTGGGTCGCCTCCGCCGACATCTCCGGCACCGTCCGAATCTGGGGGACCCACAACGAGTTCGTTCTCAAGAACGAGTTTCGGGTCCTCTCGGGTCGGATCGACGACCTCCAATGGTCCTTCGATGGGATGAGGATCGTCGCTTGTGGGGACGGCAAGGGCAAGTCCTTCGTTCGCGCCTTTATGTGGGATTCAGGTTCCACTGTTGGTGATTTTGATGGCCATTCGCGCCGGGTTTTAAGTTGTGCATTTAAACCAACAAGGCCATTCCGCATTGCCACATGTGGAGAAGATTTTTTGGCGAATTTTTATGATGGTCCACCGTTCAAGTTCAATATGTCCATCAGGGACCATTCGAATTTTGTCAACTGTGTTAGATTTTCCCCAGATGGGAGCAAGTTTATTACTGTTAGCTCAGATAGAAAGGGCATTATATATGATGGAAAGACGGGGAACAAACTTGGTGAGTTGTCCACGGAGGATGGTCACAAGGGAAGCATATATGCTGTTAGTTGGAGTCCTGACAGCAAACAGGTTCTTACTGTTTCCGCTGACAAATCTGCCAAAGTATGGAATGTTGTTGAGGATGGTAGTAGTGGAACGGTAAATAAGACTTTGGCATGTACTGAATCTGGCGGGGTGGAGGATATGCTTGTTGGTTGTCTTTGGCAGAATGATTATCTGCTTACTATCTCTCTTGGTGGCACGATCTATTTATATTCTGCTAAGGATTTAGATAAAAGCCCATTGTCATTATCTGGCCACATGAAAAATATCACTGTTTTGACTCTGCTCAACAGAAGTGAAAAGATGCTTTTGTCCAGCAGCTATGATGGAGTGATCATTAGATGGATTCCTGGCATGGGATACAGTGGTAAGTTTGAGGGTAAACAATTTGGGTTAATCAAATTGTTAGTCGCTGGCCAAGATGAAGTTATTGCTGCTGGATTTGACAACAAGGTATACAGAGTTCCTCTTCATGGGGATAATTTTGGTCCTGCTGAAACTGTTGATGTTGGAAGTCAGCCTAAGGATGTAACCCTTGCACTCAATAACCCTGAATTTGCTATCGTTGCAATTGAATCCGGAGTTGTCTTGCTAAACGGTTCTAAAATTGTTTCCACTATAAACCTGGGCTTCATTGTGACCGCGGCTGCTATGTCACCTGATGGTAGTGAAGCAATTGTGGGAGGGCAAGATGGTAAGTTGCACATGTATTCAGTCTCAGGAGATACAGTTACTGAGCAGGCTGTCCTTGAGAAGCACCGAGGTGCCATCACTGTAATCAGATACTCTCCAGACTTTTCCATGTTTGCATCAGCTGATTTGAATCGTGAAGCTGTTGTATGGGACCGTGCTTCCAAAGAGGTGAAGCTTAATAACATGTTGTTTAACACCGCACGTATTAACTGCCTAGCTTGGTCACCTGATAGCACACTCGTAGCCACTGGTTCCCTTGATACATGTGTCATTATATATGAAGTTGGAAAGCCAGCATCAAGCCGCAGAACCATAAAGGGTGCTCATATAGGTGGAGTATACGGGTTGGTTTTTATTGATCAGGAAAGAGTGGTCAGTTCAGGAGAGGATGGTTGTGTTCGTGTTTGGAATTTGATTTCTGAATAA 1833 0.4708 MATLSETYACAPSTERGRGILISGDAKTNNILYCTGRSVIIRNLDNPLQVWVYCEHAYPVTVARYSPNGEWVASADISGTVRIWGTHNEFVLKNEFRVLSGRIDDLQWSFDGMRIVACGDGKGKSFVRAFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIATCGEDFLANFYDGPPFKFNMSIRDHSNFVNCVRFSPDGSKFITVSSDRKGIIYDGKTGNKLGELSTEDGHKGSIYAVSWSPDSKQVLTVSADKSAKVWNVVEDGSSGTVNKTLACTESGGVEDMLVGCLWQNDYLLTISLGGTIYLYSAKDLDKSPLSLSGHMKNITVLTLLNRSEKMLLSSSYDGVIIRWIPGMGYSGKFEGKQFGLIKLLVAGQDEVIAAGFDNKVYRVPLHGDNFGPAETVDVGSQPKDVTLALNNPEFAIVAIESGVVLLNGSKIVSTINLGFIVTAAAMSPDGSEAIVGGQDGKLHMYSVSGDTVTEQAVLEKHRGAITVIRYSPDFSMFASADLNREAVVWDRASKEVKLNNMLFNTARINCLAWSPDSTLVATGSLDTCVIIYEVGKPASSRRTIKGAHIGGVYGLVFIDQERVVSSGEDGCVRVWNLISE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01214 610 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 610 - -
Gma20g01214 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 529 IPR001680 GO:0005515
Gma20g01214 610 Gene3D - 7 606 IPR015943 GO:0005515
Gma20g01214 610 Gene3D - 11 340 IPR015943 GO:0005515
Gma20g01214 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 610 IPR001680 GO:0005515
Gma20g01214 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 84 IPR001680 GO:0005515
Gma20g01214 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Gma20g01214 610 SMART WD40_4 268 310 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 177 216 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 567 606 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 134 174 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 219 261 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 89 133 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 46 85 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 314 354 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 438 476 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 525 563 IPR001680 GO:0005515
Gma20g01214 610 SMART WD40_4 481 520 IPR001680 GO:0005515
Gma20g01214 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 262 IPR001680 GO:0005515
Gma20g01214 610 CDD WD40 56 353 - -
Gma20g01214 610 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Gma20g01214 610 Pfam WD domain, G-beta repeat 538 562 IPR001680 GO:0005515
Gma20g01214 610 Pfam WD domain, G-beta repeat 577 606 IPR001680 GO:0005515
Gma20g01214 610 Pfam WD domain, G-beta repeat 224 261 IPR001680 GO:0005515
Gma20g01214 610 Pfam WD domain, G-beta repeat 51 84 IPR001680 GO:0005515
Gma20g01214 610 SUPERFAMILY WD40 repeat-like 32 520 IPR036322 GO:0005515
Gma20g01214 610 SUPERFAMILY WD40 repeat-like 294 607 IPR036322 GO:0005515
Gma20g01214 610 ProSitePatterns Trp-Asp (WD) repeats signature. 593 607 IPR019775 -
Gma20g01214 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Gma20g01214 610 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 610 - -
Gma20g01214 610 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Gma20g01214 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Gma20g01214 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01214 Gma-Chr20 38993650 39001873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01214 109 291 Miscellaneous Gene Families AT5G08390 26.087 7.45e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01214 K24736 - gmx:100798693 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02490 10 52288199 52294813 Gma20g01214 20 38993650 39001873 GST