Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01174 ATGGGTTTGCAAAACCAATTAAACGACGTGTCGTCGGGTTCGATTCCGCTGCTGGTCTTGGCGCAGATAGCGACCTGCGTCAACTACCTCCGCTCCATGCTTTTCGCGCTTTTGCAAACCCTTGGTCTGTGCCGATTTCACTCCGACCAGATCGTTGACGAGCGCTTCCTCGCCGCCGTCGGATCCGGCCTCGCCGGACTCATCATGCTCTCCGATCAGCTAACCCTCAGCAGCCAATTCTTCCACCACCACCACGCCGGCGCCGGCGGCCACGACCATCACCCCTGCGTCGTGTGCCAGGCCACCTTCGAGGACGGCGACCAGGTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCGCTGCTTCGACGGCTGGCTCCACCACTACAAGTTTAACTGCCCACTCTGCCGCTCACCGCTCTTCTCCGACGAGCGCGTGGCCGTCACAGAGCGCCGCCTCGGCCAGCAACTCATCTCTTGGTTCTCTCTTCACTGA 498 0.6205 MGLQNQLNDVSSGSIPLLVLAQIATCVNYLRSMLFALLQTLGLCRFHSDQIVDERFLAAVGSGLAGLIMLSDQLTLSSQFFHHHHAGAGGHDHHPCVVCQATFEDGDQVRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLFSDERVAVTERRLGQQLISWFSLH 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01174 165 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 163 - -
Gma20g01174 165 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 163 - -
Gma20g01174 165 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Gma20g01174 165 SUPERFAMILY RING/U-box 95 144 - -
Gma20g01174 165 SMART ring_2 96 137 IPR001841 -
Gma20g01174 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 147 IPR013083 -
Gma20g01174 165 Pfam Ring finger domain 96 138 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01174 Gma-Chr20 38612385 38612882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01174 1 165 C3H Transcription Factor Family AT1G15100 47.273 6.16e-45 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01174 K16282 - gmx:100797628 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02532 10 52631210 52632431 Gma20g01174 20 38612385 38612882 GST