Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01172 ATGCATAACAAGGACACTTGCTCTCCCTCCTCCAACGGCGGATTTGGCGGCGGCGCCTCTGCCGGTCAAATGCCATCAACCGGCGGCCTCTACAGTTCGCTGTACTCGGCACTGTCGAGCGAGAACCTTCCCTCGCTCTCCGCGAGCTGCAGCAACAGCAGCGGCGGCGGTGGTTCGCTCTATCCTTACTCCGAGTCAATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGTCTGAATCGCCTGGTGGAAACTTCGAAGGAGGTGGAGGCTCTGAGGGAGGAGAATGGCCTGCTCCGAGCCGCGAACAAGGAGCTCCAGAAGCAGCTGCACCTCGTCATCCAGGCTTCGCTGGAGAATCACTACGGCGGCGGCGGCTCATCCGGCCAGATGCAACCGACGCTGTTCGATGTCTTGCATGGCTTCCGCGGCCTCCACATTGGGGAAGGGAATAAAGAGAATTATGCCGATTGGAATAACAACAACCACAATAATCAAAATCATAACAATATTATGAACAATAATAATAATAACAATAAGGAGCTGCAGGAAGTTTCGGACGAGAGTCCAACGAGCGTGATTGAGAATAACAACGTGGTGGAAGTGGAGAGGTTCTCGCTCCCTAAGAGCATTTCTGTGAGGTCCAATGGCTACTTGAAGATGTCTCAGTCTGCGGCTCTTGCCCCCAACAACAACAATGCCACTCGCAACAAAGGCGCCACTCGCCCACGCGCCTCCGCCACTCCACCTGAACCCGTTCAAAAGGTATATGTGCGTGGAGGGGAGAAAGAGGAAGAGCCTCTTGAAATGATAGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGTAATAAGTGGCAGGAAACTGGCACATGCCCATATGGAGACCACTGCCAATTTGCTCATGGTATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGAATGGTCCTTGCTGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTGTCGTATCGCAGCCTAAGCCAAGATCAATGAAGCTCGAAAGATAA 1095 0.5288 MHNKDTCSPSSNGGFGGGASAGQMPSTGGLYSSLYSALSSENLPSLSASCSNSSGGGGSLYPYSESIQKHQDMVNRQSMCLNRLVETSKEVEALREENGLLRAANKELQKQLHLVIQASLENHYGGGGSSGQMQPTLFDVLHGFRGLHIGEGNKENYADWNNNNHNNQNHNNIMNNNNNNNKELQEVSDESPTSVIENNNVVEVERFSLPKSISVRSNGYLKMSQSAALAPNNNNATRNKGATRPRASATPPEPVQKVYVRGGEKEEEPLEMIVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRSMKLER 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01172 364 ProSiteProfiles Zinc finger C3H1-type profile. 317 345 IPR000571 GO:0046872
Gma20g01172 364 PANTHER CCCH ZINC FINGER/TIS11-RELATED 54 354 IPR045877 GO:0003729
Gma20g01172 364 Gene3D - 274 312 - -
Gma20g01172 364 Gene3D - 313 349 - -
Gma20g01172 364 MobiDBLite consensus disorder prediction 226 255 - -
Gma20g01172 364 Coils Coil 167 190 - -
Gma20g01172 364 Coils Coil 84 111 - -
Gma20g01172 364 MobiDBLite consensus disorder prediction 1 20 - -
Gma20g01172 364 ProSiteProfiles Zinc finger C3H1-type profile. 279 307 IPR000571 GO:0046872
Gma20g01172 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 54 354 - -
Gma20g01172 364 SMART c3hfinal6 317 344 IPR000571 GO:0046872
Gma20g01172 364 SMART c3hfinal6 279 306 IPR000571 GO:0046872
Gma20g01172 364 MobiDBLite consensus disorder prediction 226 244 - -
Gma20g01172 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Gma20g01172 364 SUPERFAMILY CCCH zinc finger 313 347 IPR036855 GO:0046872
Gma20g01172 364 SUPERFAMILY CCCH zinc finger 276 311 IPR036855 GO:0046872
Gma20g01172 364 MobiDBLite consensus disorder prediction 161 194 - -
Gma20g01172 364 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01172 Gma-Chr20 38566177 38568504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01172 24 359 C3H Transcription Factor Family AT1G68200 46.957 1.23e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma20g01172 zf-CCCH 3e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01172 K18753 - gmx:100796550 651.744