Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01163 ATGGAATCAAACACATCAAGGTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGAAAAACAAGATGATGGCATAATTGATCTGGGTCTTAGTCTAGGAACTGTTCGACATGAAGCTTACCATTCTTCTGCCAACTTGTATGATGAAGAGCTTATGGATTGGCCTCACTCCAATCTCAATCTCAAGAATTCAAGAACAATGCATTCTAGATCCGTCCACCAAAATTTTGATGAAGAGATAGAGGGCGTCCAGAGCAATGAGAGGTGGGCTTATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTACTTGATCATGGTGGATACTCAAGTCTAGCACTCCAATTAGAAGACATGTTTGGAAGCCAATCTGTTTCTGGATTACGACTGTTCCAATCGGGATCAGAGTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGGCCTGTCGGTGATGTACCATGGAAAGAGTTTATAGAATGTGTGAAGCGGTTGAGGATTGCAAGAAAGAATTCGGGCATTGTTTCCTATTCATCAAGATGCACCTAA 573 0.4084 MESNTSRFLLNSSTLHSVFYQEKQDDGIIDLGLSLGTVRHEAYHSSANLYDEELMDWPHSNLNLKNSRTMHSRSVHQNFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGSQSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIECVKRLRIARKNSGIVSYSSRCT 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01163 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 180 - -
Gma20g01163 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 180 IPR003311 GO:0005634|GO:0006355
Gma20g01163 190 Pfam AUX/IAA family 52 178 IPR033389 -
Gma20g01163 190 ProSiteProfiles PB1 domain profile. 92 180 IPR000270 GO:0005515
Gma20g01163 190 SUPERFAMILY CAD & PB1 domains 92 175 - -
Gma20g01163 190 Gene3D - 86 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01163 Gma-Chr20 38460641 38461917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01163 82 178 B3 DNA Binding Superfamily AT1G34310 32.990 2.51e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma20g01163 AUX_IAA 6.7e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01163 K14484 - gmx:100793397 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02544 10 52768780 52773399 Gma20g01163 20 38460641 38461917 GST