Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01162 ATGCCCCCTTTTGCTTTGTTGTTTTTTCTTCTTTCCTGCAACTCTCTTGCACCTGTGGTGCATTCTCTGAATGCCGAAGGTTCTGTGCTTTTGACACTAAAGCAGTCCCTTACAGACCCACAAGGATCCATGAGTAACTGGAATTCCTCCGATGAAAACCCTTGTTCATGGAATGGGATCACTTGCAAGGACCAAACTATTGTGTCCATTAGCATCCCTAAGAGGAAACTCTATGGCTCTCTTACTTCTTCTCTGGGATCTCTCTCCCAGCTCCGCCATGTCAATTTCAGGAACAACAAGCTCTTTGGAAACTTGCCTCCACAGCTCTTTCAGGCTCAGGGACTTCAAAGCTTGGTGCTTTATGGCAATTCACTTTCTGGGTCTGTTCCAAGTGAGATTCAGAACCTCAGGTACCTTCAAGCTCTAGATTTGTCACAAAATTTCTTCAATGGATCGTTGCCTGCTGGAATTGTCCAATGCAAGAGACTCAAAACCCTTGTTCTCAGTAAGAACAATTTCACTGGCCCTTTGCCAGATGGGTTCGGTACTGGTTTGTCTTCTCTGGAAAGACTAGACCTTTCTTTCAATAAGTTCAATGGGTCAATTCCCAGTGACTTGGGAAATCTTTCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTCAATTCCAGCTAGCCTTGGTAATCTGCCTGAGAAGGTTTACattgatcttacttacaacagtttaaatggtccaataccccaaaatggtgctttgatgaatagaggaccaactgcttttattggcaatcctggtctatgtggtCCTCCTTTGAAGAATTCATGTGGCTCTGATATTCCATCTGCTAGTTCACCTTCTTCATTTCCATTTATTCCTGATAACTACTCACCTCGGGATGGTAATGGTTCAAGGGGAAGTGAGAAAAACAAAGGGCTAAGTAAGGGAGCTGTGGTTGGCATTGTTGTGGGTGATATAATTGGAATTTGCCTTTTAGGTTTGCTGTTCTCTTTTTGCTACTCAAGGGTTTGTGGTTTTAACCAGGATCTGGATGAGAGTGATGTAAGCAAGGGAAGGAAAGGGAGGAAAGAGTGCTTCTGCTTCAGAAAGGATGACTCTGAGGTTCTATCTGATAATAATGTTGAGCAGTATGATCTTGTCCCATTAGATTCCCATGTGAACTTTGATTTGGATGAGCTTCTCAAGGCTTCAGCTTTTGTTCTGGGTAAGAGTGGAATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGACTTGCTTTGGCTGTGAGAAGATTGGGAGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACAGAGGTTGAAGCAATAGGGAAGTTAAGGCATCCAAATATTGCAACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATATATGATTATATACCCAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGCTGGACTTGACACATTCGCACCACTATCTTGGTCCTATAGATTGAAAATCATGAAAGGAACTGCAAAGGGATTGCTCTATCTTCATGAATTTAGTCCCAAAAAATATGTCCATGGAGACCTCAAGCCAAGTAACATACTTCTTGGACACAACATGGAACCCCACATTTCTGACTTTGGAGTTGGGCGCCTTGCAAACATTGCCGGAGGGTCTCCGACCTTGCAATCGAACCGAGTGGCCGCGGAGCAACTACAGGGAAGGCAAAAGAGCATATCCACTGAAGTCACAACCAATGTGTTGGGAAATGGTTATATGGCACCAGAAGCACTGAAAGTGGTGAAGCCATCACAGAAGTGGGATGTGTACTCATATGGTGTGATATTGTTGGAAATGATCACAGGAAGATCATCCATTGTCTTAGTGGGGAACTCAGAAATAGACCTTGTTCAGTGGATTCAGTTGTGCATTGAGGAAAAGAAGCCAGTGTTGGAGGTGTTAGACCCTTACTTGGGTGAAGATGCAGATAAGGAGGAGGAGATTATTGGAGTTTTGAAGATTGCAATGGCTTGTGTTCATAGCAGCCCCGAAAAGAGACCTACTATGAGGCACGTGCTTGATGCTTTGGATAGACTGAGTATTTCCTCTGATTGA 2133 0.4158 MPPFALLFFLLSCNSLAPVVHSLNAEGSVLLTLKQSLTDPQGSMSNWNSSDENPCSWNGITCKDQTIVSISIPKRKLYGSLTSSLGSLSQLRHVNFRNNKLFGNLPPQLFQAQGLQSLVLYGNSLSGSVPSEIQNLRYLQALDLSQNFFNGSLPAGIVQCKRLKTLVLSKNNFTGPLPDGFGTGLSSLERLDLSFNKFNGSIPSDLGNLSSLQGTVDLSHNHFSGSIPASLGNLPEKVYIDLTYNSLNGPIPQNGALMNRGPTAFIGNPGLCGPPLKNSCGSDIPSASSPSSFPFIPDNYSPRDGNGSRGSEKNKGLSKGAVVGIVVGDIIGICLLGLLFSFCYSRVCGFNQDLDESDVSKGRKGRKECFCFRKDDSEVLSDNNVEQYDLVPLDSHVNFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLATAIHGKAGLDTFAPLSWSYRLKIMKGTAKGLLYLHEFSPKKYVHGDLKPSNILLGHNMEPHISDFGVGRLANIAGGSPTLQSNRVAAEQLQGRQKSISTEVTTNVLGNGYMAPEALKVVKPSQKWDVYSYGVILLEMITGRSSIVLVGNSEIDLVQWIQLCIEEKKPVLEVLDPYLGEDADKEEEIIGVLKIAMACVHSSPEKRPTMRHVLDALDRLSISSD 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01162 710 MobiDBLite consensus disorder prediction 282 296 - -
Gma20g01162 710 MobiDBLite consensus disorder prediction 282 316 - -
Gma20g01162 710 Gene3D Phosphorylase Kinase; domain 1 376 481 - -
Gma20g01162 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Gma20g01162 710 SUPERFAMILY Protein kinase-like (PK-like) 411 702 IPR011009 -
Gma20g01162 710 SUPERFAMILY L domain-like 25 276 - -
Gma20g01162 710 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Gma20g01162 710 Gene3D Transferase(Phosphotransferase) domain 1 482 709 - -
Gma20g01162 710 Gene3D Ribonuclease Inhibitor 17 77 IPR032675 -
Gma20g01162 710 Gene3D Ribonuclease Inhibitor 78 283 IPR032675 -
Gma20g01162 710 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 5 709 - -
Gma20g01162 710 SMART serkin_6 411 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01162 710 CDD STKc_IRAK 412 705 - -
Gma20g01162 710 Pfam Leucine rich repeat 162 223 IPR001611 GO:0005515
Gma20g01162 710 Pfam Leucine rich repeat 90 147 IPR001611 GO:0005515
Gma20g01162 710 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 709 - -
Gma20g01162 710 Pfam Protein kinase domain 412 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01162 710 ProSiteProfiles Protein kinase domain profile. 406 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01162 710 SMART LRR_typ_2 88 112 IPR003591 -
Gma20g01162 710 SMART LRR_typ_2 136 160 IPR003591 -
Gma20g01162 710 SMART LRR_typ_2 185 209 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01162 Gma-Chr20 38451903 38454473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01162 6 710 Receptor kinase-like Gene Family AT2G01210 66.061 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gma20g01162 Pkinase 3.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01162 - - gmx:100792873 1360.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02545 10 52774752 52777000 Gma20g01162 20 38451903 38454473 GST