Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01149 ATGTTCTCCCCTCTCATAAATAAAACACTAATAATATTTTTGTCACAGCTTCTGCTTCTTGTTTCAGCTCAGGATGATGGAAAGTGTTCACCGTCTTTCAACTGTGGATATCTTGGCCTCATTAAGTTTCCTTTCACAACCACAAAGCAACCACACTGCGGCTTATTGGCTATACATGGCTGTGAAGAACACGATCCATACGCTCCCAAAACCGTCAAACTAAGCAATTCAACATCAAGATCTTACACTGTTCTGCAGGTTGAACCTCGTACCATAGGGATCTTAGATGAGAAACAAGATCATTATTTGAAAACCAGAAATTGCACAATCTTCACCGGAGTCaattttactcttcctcacacctctcctttagcttctttccacatcaaatataatataactatcttcagatgcaatcactccctcaaaatcgtcacctttcccaaatatttttatagatattcaaactgtcctgaatacgatatctactatggccttccaaatactgaaactcctctgggcttcaagtggcccagctctttggcaccatgctcaaccactcagcttgctgtagacaagatatctactcgcaatccctttcaatttctatctggtattatgattattgaagtacgattatctgatgaatgtgaaaggtgtcttcttgatggaaaaaaccgatgtttacttgacagtaaaggaaaattctattgcgccagagGATCCCTCCCTCTTTGTTGGTTTCTAGGTATTGGACTCCCAGGAATTATTATAATTGGGCTACTGATTATATGGCACTGCAAACCAAGATATGTGTCTGATTTCTATTCAAATCCATACCCCGAGAGTGCGAGTATCTACTCTGGGGTCCCTGTGTTCACCTTTAAGGATCTTGAAATAGCAACAAAATGTTTTGACAGTTCAAGAGAACTAGGAGAAGGAGGCTTTGGTATTGTTTACTATGGTAAGCTTCAGGATGGACGAGAAGTTGCTGTCAAACGCCTATATGAGAACAACTACAGGCGAGTAGAGCAGTTCATGAATGAAATCAAGATCCTCATGAACTTGCGCCACACAAATTTAGTGTCTCTTTATGGCTCCACTTCACGTCACAGCCGTGAACTATTGCTTGTGTATGAATACATTTCAAATGGGACTGTGGCCAGTCATCTCCATCACTATGGATCAACAAATACTGGGTTTTTGCCATGGCCTATTCGAAtgaaagttgccatagagactgctactgctttggcctatctccatgcttctgacataattcaccgtgatgtcaaaacaaacaacattctccttgacaaCACTTTTTGTGTTAAAGTTGCAGACTTTGGACTGTCAAGACTGTTCCCCAATGATGTCACACACGTTTCCACAGCTCCCCAAGGAACACCTGGCTATGTTGATCCGGAATATCACAGATGCTACCAGCTTACAAACAAGAGTGATGTGTATAGTTTCGGGGTTGTGCTGATTGAGCTAATATCATCTATGCCACCAATTGATCTGACCAGGCATAAGGATGAAATAAACTTGGCAGATCTAGCCATAAGGAAGATTCAAAAAAGTGCACTTGCAGAGCTGGTGAATCCTTCCCTTGGTTATGATTCAAATAGTGATGTTAAAAGGCAAATAACTTCAGTAGCAGAATTGGCTTTTCAGTGTTTGCAACGGGACAGAGAATTGAGACCCTCCATGGATGAAGTCTTGGAGGTGTTGAGGAGAATTGGGAGTCAGAAGGATGATCTAGAGGAAGTAAAAGTTTACGGTGAAGGTCCATTATCACCATCTTTACCAGATCATGACCAAATTGGACCAAGCTCGATTAAAGTTCAAAAATTTGAGATGCAAAGGTTTGCTACTATTGTTTACTTCACAGATCATCATCTCAGAAATCTCTTGCAATCTGATAGTTGTGAGATCTTTAGCTACAATATTACACTTCCTCCTAGCTCTCCTTTGGGTTACTTTACTATTAACAACAATATAACTTTGTTCAAGTGCAACCGCACCCTCCAAGTTAACACCCCAAAAACTTTCCTCAAAAATACAAGCTGTGGCTATGATATCTTCATGGGCCCTCCACACTCTGATGATGTGTCTCAGGGCTCTCTTGCAGCATGTTCAATGGTTCAGCTTCCCATGAATGGCTTTGCAGTCTCTGCAAACCCATTTGCATTCTTAACTGCGGAGATTAGCGTTCAGTTCCTTCCATCAGATGAGTGCATGCAGTGTCATCATTACAGAGGCCATTGTCACCTTGACAGCCAAAGAAAAGTTAATTGCGCCCAAAGGAAGGGTAAAAGTTCGGCCTGGAAGCTAGGATTGACATTAGGTTTAGGTGTTGCACCTGCATGGATGATAATTATATTTGGGTTGATCCTCACGTTACGGCGCTGCAAACGGCAATATGGTCTTGCACAAACTCAACTCCAATCAAGAAATACTCGCATTGATCCTTACGAGAAATCCGACTCAATGACGGACAGGATCTTCTTTGGGGTACCCGTCTTTTCTTATAAAGAGCTTCAAGAAGCCACAAACAATTTTGACCACAAAACAAAGCTAGGAGAGGGAGGATTTGGAAGTGTTTACTATGGAAAACTCCAAGATGGACGGGAAGTTGCAGTGAAACACTTGTTCGAGCACAATTATAAGAGAGTGCAGCAATTTATGAACGAAATTGAGATTCTCACTCACTTACGCCATAGAAACCTCGTGTCCCTCTATGGCTGCACTTCACGTCACAGCCGAGAGTTACTACTCGTGTACGAATATGTCCCAAATGGCACCCTTGCATACCATCTCCATGAAAGGGATGATTCGCTCACGTGGCCCATTCGAATGCAAattgcaatagagaccgctactgcattggcttatctccacgcttccgacatcattcaccgtgacgttaaaaccagcaacattctactcgacaacaatttttgggttaaggtggcagattttgggctTTCAAGGCTGCTCCCCAATGACGTAAGTCACGTGTCGACGGCTCCACAAGGGACCCCGGGGTACCTTGACCCAGAGTATTTCCAACACTACCAGTTAACGGATAAGAGTGATGTGTATAGCTTTGGGGTTGTGCTTATTGAGCTAATATCGTCCATGCCAGCGCTTGATGCGGCCAGGGAAATTGATGAAATTAATTTGGCAAATCTTGCAATAAAAAGGATTCAAAATGGTAAGCTTGGTGAGCTGGTGGCCAAATCCCTTGGTTTTGATTCGGACCAAGAAGTTACAAGAACGTTGGCTTCAGTGGCAGAATTGGCCTTTCGGTGTGTGCAGGGGGACCGGCAATTAAGACCTTGCATGGATGAAGTCGTGGAAGCACTCCAGAAAATTCAAAGTGGGAATTATGAGTCTGAGGATGTAGAGAAAGGAGGGATCTGGCACAGTGAAGGAGAGTCAAATTTTTCAGTACACAGGGGACTCGGACTGGGGTCAAGTTAG 3489 0.358 MFSPLINKTLIIFLSQLLLLVSAQDDGKCSPSFNCGYLGLIKFPFTTTKQPHCGLLAIHGCEEHDPYAPKTVKLSNSTSRSYTVLQVEPRTIGILDEKQDHYLKTRNCTIFTGVNFTLPHTSPLASFHIKYNITIFRCNHSLKIVTFPKYFYRYSNCPEYDIYYGLPNTETPLGFKWPSSLAPCSTTQLAVDKISTRNPFQFLSGIMIIEVRLSDECERCLLDGKNRCLLDSKGKFYCARGSLPLCWFLGIGLPGIIIIGLLIIWHCKPRYVSDFYSNPYPESASIYSGVPVFTFKDLEIATKCFDSSRELGEGGFGIVYYGKLQDGREVAVKRLYENNYRRVEQFMNEIKILMNLRHTNLVSLYGSTSRHSRELLLVYEYISNGTVASHLHHYGSTNTGFLPWPIRMKVAIETATALAYLHASDIIHRDVKTNNILLDNTFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHRCYQLTNKSDVYSFGVVLIELISSMPPIDLTRHKDEINLADLAIRKIQKSALAELVNPSLGYDSNSDVKRQITSVAELAFQCLQRDRELRPSMDEVLEVLRRIGSQKDDLEEVKVYGEGPLSPSLPDHDQIGPSSIKVQKFEMQRFATIVYFTDHHLRNLLQSDSCEIFSYNITLPPSSPLGYFTINNNITLFKCNRTLQVNTPKTFLKNTSCGYDIFMGPPHSDDVSQGSLAACSMVQLPMNGFAVSANPFAFLTAEISVQFLPSDECMQCHHYRGHCHLDSQRKVNCAQRKGKSSAWKLGLTLGLGVAPAWMIIIFGLILTLRRCKRQYGLAQTQLQSRNTRIDPYEKSDSMTDRIFFGVPVFSYKELQEATNNFDHKTKLGEGGFGSVYYGKLQDGREVAVKHLFEHNYKRVQQFMNEIEILTHLRHRNLVSLYGCTSRHSRELLLVYEYVPNGTLAYHLHERDDSLTWPIRMQIAIETATALAYLHASDIIHRDVKTSNILLDNNFWVKVADFGLSRLLPNDVSHVSTAPQGTPGYLDPEYFQHYQLTDKSDVYSFGVVLIELISSMPALDAAREIDEINLANLAIKRIQNGKLGELVAKSLGFDSDQEVTRTLASVAELAFRCVQGDRQLRPCMDEVVEALQKIQSGNYESEDVEKGGIWHSEGESNFSVHRGLGLGSS 1162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01149 1162 Gene3D Transferase(Phosphotransferase) domain 1 382 593 - -
Gma20g01149 1162 Pfam Protein tyrosine and serine/threonine kinase 858 1124 IPR001245 GO:0004672|GO:0006468
Gma20g01149 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 972 984 IPR008271 GO:0004672|GO:0006468
Gma20g01149 1162 ProSiteProfiles Protein kinase domain profile. 305 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01149 1162 SUPERFAMILY Protein kinase-like (PK-like) 830 1128 IPR011009 -
Gma20g01149 1162 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 626 1134 IPR044652 -
Gma20g01149 1162 Pfam Protein kinase domain 306 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01149 1162 Gene3D Transferase(Phosphotransferase) domain 1 932 1143 - -
Gma20g01149 1162 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Gma20g01149 1162 ProSiteProfiles Protein kinase domain profile. 855 1127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01149 1162 ProSitePatterns Protein kinases ATP-binding region signature. 861 883 IPR017441 GO:0005524
Gma20g01149 1162 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Gma20g01149 1162 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 626 1134 - -
Gma20g01149 1162 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 604 IPR044652 -
Gma20g01149 1162 SUPERFAMILY Protein kinase-like (PK-like) 278 584 IPR011009 -
Gma20g01149 1162 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 1 604 - -
Gma20g01149 1162 SMART serkin_6 305 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01149 1162 SMART serkin_6 855 1129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01149 1162 Gene3D Phosphorylase Kinase; domain 1 280 381 - -
Gma20g01149 1162 Gene3D Phosphorylase Kinase; domain 1 827 931 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01149 Gma-Chr20 38329218 38336527 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01149 33 585 Receptor kinase-like Gene Family AT1G25390 46.771 4.15e-145 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gma20g01149 Pkinase 5.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01149 - - gmx:100790240 1199.11