Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01148 ATGTCTCCGGCTTATGTACtttggttccttttgttttcttctctaccggtgctgcttctctcagaagggaatgcaaatggacaccgtgatgattgtccagactcatttgactgcggaagcatagggaaaatttacttcccattcacgacggtagaacgccacaactgtggtgttctggcaatccgtggctgtaatgattccgaccaaACATCAGCGAAGCATGTCCTGTTGACCAAAGGAGGAAAACCATTCCAAGTTACGCAAGTTAATTGTAAGTGGGGGTGGCCCTGTAGTATTTCTATTATCGACCAGGATTTCAGAGGGCTTCTGGAAAATGGTAGTTGTAAGGCCTTGAGCTATAACATTAGGGTCCCTCCCTCCTCTGCTTTCGGTTATTTTGATGTGCAAAACAATATTAGCATCTTCAACTGCAGCCGCCATCTACGCAAACTCAACCATATAAATGGCTTCATCAACTATACCAGCACCAGATGTCCTTCCTCTGTTTATTACTTTGCCCCTCCATCCACTGATGATCAGACCCTGCGCTCTTTAACCTCCTCATGTTCAATGGTTCAACTTCCAAAAAGAATAGATTCTGAGTTCTTCAAAGGCGATCCATTTGGATTTTTAACTGCTGAAATTACTTTTGAATTCACGTTTTCGCATGATTGTATCCGGTGTCACGAGGAAGGAAGGGGCTTTTGTCGACCAGACAGCAACGGGAAATTTCATTGTGCCTCTCCCACGACTCCCACAACTCCCACGAGGAAAAGTACGGTTATGACACGGAAGATAGCATTGATTCTAGGCGCCGTCGTAGGACCATGTATCATAGTCGGGTTGTTCCTCACATTACGTCGCTGCAAACGGAAATATGGTCAATCCAGCAACACTTGTGCTGATTCCTTCCCAAATCCTGACACCGAGACTGACAGGATCTTCTTTGGGGTACCCGTCTTCTCCTATAAGGAGCTTCAAGAAGCAACCAACAATTTTGACCCCACTAGAAAGCTAGGAGATGGAGGCTTTGGCACTGTTTACTATGGGACACTAAGAGATGGAAGGGAAGTTGCAATCAAGCATCTATTTGAGCACAACTACAAGAGAGTGCAACAGTTTATGAACGAAATTGAGATCCTTACCCGCTTACGCCACAGAAATCTTGTGTCCCTCTATGGCTGCACTTCACGTCACGGCCAAGAGCTACTTCTTGTATATGAATATGTTCCTAATGGCACAGTTGCTAGCCATCTCCATGGTGATTTGGCAAGGGTTGGATTGTTGACATGGCCTATTCGAATGCAAATTGCCATAGAGACAGCTACTGCATTGGCCTATCTCCATGCTTCTAACATCATCCACCGTGATGTCAAAACCAACAACATTCTACTTGACATTAGTTTTTCGGTTAAGGTGGCAGATTTTGGGCTTTCAAGATTGCTCCCCAATGATGTAAGCCATGTCTCCACAGCTCCACAAGGGTCTCCGGGGTATGTTGATCCTGAATATTTCCGATGCTACCGCCTCACGGACaaaagtgatgtgtatagctttggagttgttctcatggagctaatATCATCTATGCCAGCAGTTGATACAGTCAGGGAAAGAGATGAAGTTAACTTGGCAAATCTTGCCATGAAAAAGATTCACAAGGGAAAACTTAGTGAGCTTGTAGACCCATCCTTTGGTTTTGAGACAGACCAACAAGTTAAAAGGGTGATAACTTCAGTGGCAGAATTGGCCTTTCGGTGCATTCAAGCGGACAATGATTTAAGGCCCTCTATGGATGAAGTTCTGGAAGCACTCAAGAATATTGGAGGTGGGAAATTTGAGTCTGAGCATATAGAGAAAGAAGGTGATAGTGGTGGTGTTATCTCTTCCACTTCCACGGAACAAGTCCATCCACCAGTTGAATTTCTTATGAATGAGAAGCTACCAGCTTCGCCAAAGTCTTTGACTGAGAAATGGGAAAGTGAATCTACAACGCCTAATGCCAGTGGTTAA 2013 0.3944 MSPAYVLWFLLFSSLPVLLLSEGNANGHRDDCPDSFDCGSIGKIYFPFTTVERHNCGVLAIRGCNDSDQTSAKHVLLTKGGKPFQVTQVNCKWGWPCSISIIDQDFRGLLENGSCKALSYNIRVPPSSAFGYFDVQNNISIFNCSRHLRKLNHINGFINYTSTRCPSSVYYFAPPSTDDQTLRSLTSSCSMVQLPKRIDSEFFKGDPFGFLTAEITFEFTFSHDCIRCHEEGRGFCRPDSNGKFHCASPTTPTTPTRKSTVMTRKIALILGAVVGPCIIVGLFLTLRRCKRKYGQSSNTCADSFPNPDTETDRIFFGVPVFSYKELQEATNNFDPTRKLGDGGFGTVYYGTLRDGREVAIKHLFEHNYKRVQQFMNEIEILTRLRHRNLVSLYGCTSRHGQELLLVYEYVPNGTVASHLHGDLARVGLLTWPIRMQIAIETATALAYLHASNIIHRDVKTNNILLDISFSVKVADFGLSRLLPNDVSHVSTAPQGSPGYVDPEYFRCYRLTDKSDVYSFGVVLMELISSMPAVDTVRERDEVNLANLAMKKIHKGKLSELVDPSFGFETDQQVKRVITSVAELAFRCIQADNDLRPSMDEVLEALKNIGGGKFESEHIEKEGDSGGVISSTSTEQVHPPVEFLMNEKLPASPKSLTEKWESESTTPNASG 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01148 670 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 17 669 - -
Gma20g01148 670 SMART serkin_6 333 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01148 670 MobiDBLite consensus disorder prediction 656 670 - -
Gma20g01148 670 SUPERFAMILY Protein kinase-like (PK-like) 316 606 IPR011009 -
Gma20g01148 670 ProSiteProfiles Protein kinase domain profile. 333 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01148 670 CDD STKc_IRAK 339 608 - -
Gma20g01148 670 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Gma20g01148 670 Gene3D Phosphorylase Kinase; domain 1 307 409 - -
Gma20g01148 670 Pfam Protein kinase domain 336 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01148 670 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 669 IPR044652 -
Gma20g01148 670 Gene3D Transferase(Phosphotransferase) domain 1 410 614 - -
Gma20g01148 670 MobiDBLite consensus disorder prediction 614 670 - -
Gma20g01148 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01148 Gma-Chr20 38322455 38328913 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01148 29 670 Receptor kinase-like Gene Family AT1G25390 45.370 3.10e-166 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gma20g01148 Pkinase 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01148 - - gmx:100789176 1347.03