Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01143 ATGGTTGCACTTGATGTGTTTGGCGTTGCTTTGTTGGCATGCCTTGTAGGAGTGGTATCGGGTGAGACTTGTCCGTCTTTAATCAACTGCGGCGATCTGGGTAGCATCACTTTTCCTTTCACTAACACACTTCACCAAGACTGTGGCATATTGGTGATACATGGCTGTGATGACAAGGAACCAGGGGCCAAAAAAACCATAAAATGTAACAATACATGGTTTGATGTTGTCGGGCTCGACCAGTTTACGATTACCATAAAAGACGATAAACTGCACGACTTGTTGCTACAAAGAAGTTGCGACACCTTCAGCTACAGCTCTACGTTCACAGTCAGCTCCCCTTTGCTTAAGGCTTCTCGTTTAAAGCATTACCTAGAGATACTCAGATGCAACCACACCCTCGGTCATCCGCCAAAAAAATCTGTTTCTAACAACACACTTTGCAAAAATGAAACACTCTATTCAATGGTGGACCCCAACCCCTCCGGCTCCGGGTACAGTCATCACAATGGATGTTCGATGCTTCTGATTCCAACCTGCTTGCAGCTACTGGATCGCCATGGCCATCTATATTccagtgaccctttcgagttcataactgataatatcgccgtcgaaatagaattatctccggattgttctacttgtatctatgctcatggaggccaatgtcggcttgacaacacccaaaagttttattgttacaaagGAAATAAATCGACTCTTCTTATAGCAGCAATTGCATCTGCCGGTGGAGCACTAGGAGCTATGATATTTTTGATTTGGTGCATTAGAAGACGCTTTTACaagaagaaaaatcccacccaccaaataattgagatgtttctgaacacccacggtcaccttgcagccaaaagatacagttattcagagataaagaaggccaccaactccttcagatacaaattgggtcacggaggatatggtagtgtatataaggggaagttacaagatggaagccttgtggcagtaaaagttttaagcgactccataggtaacggtgaggaatttatcaatgaagttgctagcataagtgtcacttcccatgttaacattgttagtttactgggattctgtctggaaggttctaaaagagctctgatatataagtacatgcctaatgggtcacttgagaagttcatatatgaagacaaggatccactcaagctcaatcttcaattgagttgcaaaaccatctacaatattgcaatcggcgttgctcgaggattggagtatttgcacaggggttgcaatactaaaatcttgcattttgacatcaaacctcacaatatattgctagatgaggatttctgtccaaagatttccgattttggactagctaaaatatgtccaaagaaagagagtattgtgtccttattgggaaccagaggaacagcgggatacattgctcctgaggtattctcaagaaacttcggagaagtgtcacataaatctgatgtgtacagctatggaatgatggttttggaaatggttggggaaagggtgaataacaatgttgaagttgaatgttcaagtgaaatatattttccacactgggtttacaagcgtcttgaactgaatcaggagcctagattgcgaagcataaaaaatgaaagtgataaagaaatggtacgaaagttggttatagtgagcttatggtgcattcaaacagacccgtcaaataggccagcaatgagtagagtggtagatatgatggaaggaagcatggagtccttgcaaataccaccaaaaccttatctctcttcacctcccagatctccccCAAGACCCTCGGATCACAACACTTACACATCTCACACTACGTATCCTTCTGAGAACTGA 1863 0.1761 MVALDVFGVALLACLVGVVSGETCPSLINCGDLGSITFPFTNTLHQDCGILVIHGCDDKEPGAKKTIKCNNTWFDVVGLDQFTITIKDDKLHDLLLQRSCDTFSYSSTFTVSSPLLKASRLKHYLEILRCNHTLGHPPKKSVSNNTLCKNETLYSMVDPNPSGSGYSHHNGCSMLLIPTCLQLLDRHGHLYSSDPFEFITDNIAVEIELSPDCSTCIYAHGGQCRLDNTQKFYCYKGNKSTLLIAAIASAGGALGAMIFLIWCIRRRFYKKKNPTHQIIEMFLNTHGHLAAKRYSYSEIKKATNSFRYKLGHGGYGSVYKGKLQDGSLVAVKVLSDSIGNGEEFINEVASISVTSHVNIVSLLGFCLEGSKRALIYKYMPNGSLEKFIYEDKDPLKLNLQLSCKTIYNIAIGVARGLEYLHRGCNTKILHFDIKPHNILLDEDFCPKISDFGLAKICPKKESIVSLLGTRGTAGYIAPEVFSRNFGEVSHKSDVYSYGMMVLEMVGERVNNNVEVECSSEIYFPHWVYKRLELNQEPRLRSIKNESDKEMVRKLVIVSLWCIQTDPSNRPAMSRVVDMMEGSMESLQIPPKPYLSSPPRSPPRPSDHNTYTSHTTYPSEN 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01143 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Gma20g01143 620 SUPERFAMILY Protein kinase-like (PK-like) 283 579 IPR011009 -
Gma20g01143 620 Pfam Protein kinase domain 309 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01143 620 SMART serkin_6 304 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01143 620 Gene3D Phosphorylase Kinase; domain 1 281 378 - -
Gma20g01143 620 MobiDBLite consensus disorder prediction 586 620 - -
Gma20g01143 620 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 30 620 - -
Gma20g01143 620 ProSiteProfiles Protein kinase domain profile. 304 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01143 620 MobiDBLite consensus disorder prediction 605 620 - -
Gma20g01143 620 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Gma20g01143 620 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 620 IPR045874 GO:0004672
Gma20g01143 620 Gene3D Transferase(Phosphotransferase) domain 1 379 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01143 Gma-Chr20 38241903 38246335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01143 202 611 Receptor kinase-like Gene Family AT5G38260 49.764 6.77e-131 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gma20g01143 Pkinase 5.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01143 - - gmx:100785979 1207.97