Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01142 ATGAGAAAACTCAAGAGAAATCTTCACTCCTCACTCCTCACTCCTCTCTCTCTGAGAACAACAATGGCAGGAGCAAAACTCTCTCGCCTCGTTGCTGTTCTCCATTTTCTTATTCTTCTCATGGTTCAAGGTTTTAGTAACCCAGATTTCGACGCCCTTGTGGCCTTCAAAACCGCCTCAGACACTTCCCAAAAGCTCACAGCATGGAACCTTAACAGCACCACCAACAACAACCCATGTTCCTGGAGCGGCGTGTCGTGCATTCGCGATCGAGTCTCCCGACTCGTTCTCGAAAACCTTGACCTCGAAGGTTCCATTCATCCCTTAACCTCTCTGACTCAGCTCCGAGTTCTGAGTCTCAAAGGAAACCGTTTCTCCGGTCCCCTTCCCAACCTCTCCAACCTCACTGCTCTAAAACTCCTCTTCTTATCACGCAATTCCTTCTCCGGCGAGTTTCCGGCGACCGTCACGTCGCTCTTCCGCCTCTACCGTCTTGATCTTTCCAACAACAACTTCTCCGGCGAGATTCCTGCGAAGGTCGGCCACTTGACCCACCTTTTCACTCTCCGTCTCGACGGTAACAAGTTCTCCGGCCACATTCCCGACTTGAACCTCCCCGAACTCCAAGAGTTCAACGTCTCCAGCAACCGCTTCTCCGGCGAGATACCCAAGTCCTTGTCAAAATTCCCCGAATCCTCGTTCGGGCAAAACCCGTTTCTCTGCGGAGCCCCAATTAAAAACTGTGCATCCGACCCTACAATACCCGGATCCGAAAGCGCCATTGCGTCACTATTGATACCACCAAACAACAACCCAACAACCAGTGTATCATCTTCGCCAAGTCCAATGCCAAAAACACCAACATCGACATCAACAAGTAGTAATAAAAGCCACGAAAAGGGTGCTTCGAAGATAAGTCCGGTGGTGCTTATAGCTATTATTACGGGTGGCGTTTTGGTTCTAATTGCAATAGCGTTTTTGCTTCTGTGTTGCTACTTCTGGAGGAACTATAAGTTGAAGGGGGGGAAAGGATCGAAGGTTTTCGATAGTGAGAAGATTGTGTGCTCGTCGAGTCCGTTCCCTGATCAGGGAGGGTTGGAGAGGAATCGAATGGTGTTCTTCGAAGGTGAGAAAAGGTATGAAATTGAGGACTTGCTGGAATCCCCTTCGGAAATGCTTGGGACGGGTTGGTTTGGGACTACGTACAAGGCAGAGCTCGATGGTGTGAACGTGTTTGCAGTCAAGGGACTCGGTGGCACATACATGACAGGGAAGAGAGAGTTCGAACAACACATGGAAGTGTTGGGAAGGTTGAGACATCCCAATGTTGTTAGTTTGAGAGCTTACTATTTCACGAGCGAGATAAAGTTGTTGGTCTATGATTACGAGTCCAATCCCAACTTGTTCCAGCGCCTTCACGGATTGGGACGAATCCCACTGGACTGGACCAATAGGCTCAAGATAGCAGCGGGAGCGGCGCGAGGCGTGGCTTTCATTCATAACTCGTGCAAGTCCCTTAGGCTCATCCACGGTTACATCAAATCCACCAACGTCCAACTCGACAAGCAGGGGAATGCACGCATGTCTGATTTTGGGCTCTCCGTGTTCGCGCGCCCAGGCCCAGTGGGTGGCAGATGCAACGGCTACCTCGCGCCGGAGGCATCGGAGGATGGAAAACAGACGCAGGAATCTGATGTGTACTCTTTTGGTGTGCTCCTGCTGGAGCTGCTGACAGGGAAGTTCCCCGCCAAGGTGAAGACTGAAGAGGTTGGTTTCGGTGCGTTGCTGGACATTCCGATGTGGGTCCGGTCAGTGCCGAGGAAGAGGTGGACCCTTGACGTGTTTGATTGGGACCTGATGAGGCATAAGGATATTGAGGAGGAGATGGTGGGGCTGCTTCAGATTGCGATGACCTGTACCGCGGCTGCACCTGATCAACGGCCCACCATGACCCACGTCGTCAAGATGATCGAGGAGTTGCGTGGGGTCGAGGTGTCGCCGTGTCATCACTAG 2013 0.5166 MRKLKRNLHSSLLTPLSLRTTMAGAKLSRLVAVLHFLILLMVQGFSNPDFDALVAFKTASDTSQKLTAWNLNSTTNNNPCSWSGVSCIRDRVSRLVLENLDLEGSIHPLTSLTQLRVLSLKGNRFSGPLPNLSNLTALKLLFLSRNSFSGEFPATVTSLFRLYRLDLSNNNFSGEIPAKVGHLTHLFTLRLDGNKFSGHIPDLNLPELQEFNVSSNRFSGEIPKSLSKFPESSFGQNPFLCGAPIKNCASDPTIPGSESAIASLLIPPNNNPTTSVSSSPSPMPKTPTSTSTSSNKSHEKGASKISPVVLIAIITGGVLVLIAIAFLLLCCYFWRNYKLKGGKGSKVFDSEKIVCSSSPFPDQGGLERNRMVFFEGEKRYEIEDLLESPSEMLGTGWFGTTYKAELDGVNVFAVKGLGGTYMTGKREFEQHMEVLGRLRHPNVVSLRAYYFTSEIKLLVYDYESNPNLFQRLHGLGRIPLDWTNRLKIAAGAARGVAFIHNSCKSLRLIHGYIKSTNVQLDKQGNARMSDFGLSVFARPGPVGGRCNGYLAPEASEDGKQTQESDVYSFGVLLLELLTGKFPAKVKTEEVGFGALLDIPMWVRSVPRKRWTLDVFDWDLMRHKDIEEEMVGLLQIAMTCTAAAPDQRPTMTHVVKMIEELRGVEVSPCHH 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01142 670 Gene3D Ribonuclease Inhibitor 47 203 IPR032675 -
Gma20g01142 670 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Gma20g01142 670 MobiDBLite consensus disorder prediction 271 300 - -
Gma20g01142 670 Pfam Protein tyrosine and serine/threonine kinase 391 656 IPR001245 GO:0004672|GO:0006468
Gma20g01142 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 29 661 - -
Gma20g01142 670 Gene3D Transferase(Phosphotransferase) domain 1 464 666 - -
Gma20g01142 670 Pfam Leucine rich repeat N-terminal domain 47 87 IPR013210 -
Gma20g01142 670 SUPERFAMILY L domain-like 73 245 - -
Gma20g01142 670 ProSiteProfiles Protein kinase domain profile. 387 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01142 670 SUPERFAMILY Protein kinase-like (PK-like) 390 657 IPR011009 -
Gma20g01142 670 Gene3D Phosphorylase Kinase; domain 1 373 462 - -
Gma20g01142 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 29 661 - -
Gma20g01142 670 Gene3D Ribonuclease Inhibitor 204 249 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01142 Gma-Chr20 38192037 38194419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01142 49 669 Receptor kinase-like Gene Family AT1G68400 58.281 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gma20g01142 PK_Tyr_Ser-Thr 2.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01142 - - gmx:100783323 1279.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02554 10 52916506 52919330 Gma20g01142 20 38192037 38194419 GST