Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01132 ATGTCCACAATTGCAAAGAGAGATTTGAGTTGTAATGAAGAAGAGAGTGAGCTGAGAAGAGGTCCTTGGACTCTTGAAGAAGACAGCTTACTTATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGTTGCAGACTCAGATGGCTGAATTATTTGAAACCAGACATTAAGAGAGGGAACCTCACTCCACAGGAGCAACTCTTGATCCTCGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACAAGGGTACAGAAACAGGCACGCCAGCTTAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGATTGCTCCAAAAGATGGAACAGAGCAATTCTCCAAGCCCTCAGTCTTCCATGACAACCATGATGAATTTAGGGAATTCTGGAGAAGCTTCTATGAGTTCAATGTCAAGCAGCTTCAATATTAATCCTTCTATGTCTTCTTCATCATCTCCTCCACAAAGGAAATTTATTATGGATGATGCTAATCATTTTAGTACTATGTCCAACCCCATCAATCCATCCCCAGATTCCTTCCAATTTTCACAGCCACTTGAAATTTCTGAACACCCCAAAAGTCCTCCCAATGTGTTTGAGAACAATGTTTGCAGCTATCCAATCCAGGACAATTGCTATCTTGATACCAATAACTATGGCATGGAAGGCATAAACATGGATCCCCTTTCAGCAATGGATACTTATGACTTCTCACAGTTTGATTTTCAGACTGCAGGGAATGGATGGATGCTAGACAGCATGGGGGATTCCACTTTATGGAACATGGATGCTATGTGA 924 0.4188 MSTIAKRDLSCNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQSNSPSPQSSMTTMMNLGNSGEASMSSMSSSFNINPSMSSSSSPPQRKFIMDDANHFSTMSNPINPSPDSFQFSQPLEISEHPKSPPNVFENNVCSYPIQDNCYLDTNNYGMEGINMDPLSAMDTYDFSQFDFQTAGNGWMLDSMGDSTLWNMDAM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01132 307 SMART sant 19 69 IPR001005 -
Gma20g01132 307 SMART sant 72 120 IPR001005 -
Gma20g01132 307 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Gma20g01132 307 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Gma20g01132 307 MobiDBLite consensus disorder prediction 172 196 - -
Gma20g01132 307 CDD SANT 77 116 IPR001005 -
Gma20g01132 307 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 305 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gma20g01132 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Gma20g01132 307 Gene3D - 76 118 - -
Gma20g01132 307 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 9 305 - -
Gma20g01132 307 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Gma20g01132 307 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Gma20g01132 307 CDD SANT 22 67 IPR001005 -
Gma20g01132 307 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Gma20g01132 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Gma20g01132 307 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Gma20g01132 307 Gene3D - 17 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01132 Gma-Chr20 38057570 38059169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01132 15 282 MYB Transcription Factor Family AT1G68320 52.878 1.45e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma20g01132 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01132 K09422 - gmx:100775834 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02564 10 53031816 53032969 Gma20g01132 20 38057570 38059169 GST