Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01117 ATGAGTTCGGCTACTAAGAACGCAGCAAACGCGGTTGGGGGAAAAACTGCAAGAGCATGTGACGGCTGCATAACGAAACGTGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAGGCTTGTGACTCTTCGGTTCACTTGGCGAATCCTTTGGCTCGAAGACACGAACGAGTCCGCTTGAAAACCGCGTCGTACAAGTCCACCGATGAACGACGACAACCTCCCACGTGGCACACCAAGAAACCTCGAACGCCCAGACATGGGAAACATTCTCGTAACAACAACCCTTTCCACTTGGTCCCTGAAGAGGGTTCCGAAGAGGCGAATTCCCATGATGAGAATGAGGAGCAGCTCGTTTATAGGGTCCCCATAGTCGACCCTTTTGTTGCTGAGCTATGTGGGACTAATAGTTCTCCTTCTTCTGTTACTTCAACTGATCAAGGGGTAGTAGCTGCTGCTGCTGCTGCTTCTGCTGAGGTTGAATACAAAGGGATTCAAAGCAATGATTTTTGTAGCAATAGCAATGAGATCGAAAACTTGCATGGGATGCTTCCTTCGGATGCAGAACTTGCTGAGTTTGCTGCTGATGTTGAGAGCTTTTTGGGTAGGGGGCTTGAAAACAAGTGCGTGGGGATGGAAGAATTGGGACTCGTTGATACCAAAGAAGAGGAGTGTTCGGTGGGTAGTGGGAAGGTGAAGGTGGAAGAGGAAGAGAGCCCTCTGATGGAGATGGATATGGGAAGAGATGATCAATCATTTGAGTTGAGCTTTGATTATGAGACGTGTGAAGAGGTAAAGGAGATGAAGGTTAGTGATTTGGAATTGGGGAATGAGTTAGGAGAGATGAAAGAGAATGATGATGATGAGGTGAAAAGGAAGAAGGTATCGTTGCAGCTTGATTATGAGGCGATAATCATCGCCTGGGCTAGCCAAAAGTCTCCGTGGACCACTGCTGACAAACAAAACTTGGACCCTGATGAGTGCTGGCACCAATGCATGGGAAGTTGCGGAACGGCATTTCATCACCCTTACGGTGAACTGGGTGGATTTGGGATTCATTCAGTGATAGTAGACGGGGGCAGAGAGGCAAGGGTGTCAAGATACAGAGAGAAGCGCCGAACTAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTTAAGAGGGCTTCCTTTGCACCACCAACATTTCCTTTGCTAAATAAATAA 1257 0.4781 MSSATKNAANAVGGKTARACDGCITKRARWYCAADDAFLCQACDSSVHLANPLARRHERVRLKTASYKSTDERRQPPTWHTKKPRTPRHGKHSRNNNPFHLVPEEGSEEANSHDENEEQLVYRVPIVDPFVAELCGTNSSPSSVTSTDQGVVAAAAAASAEVEYKGIQSNDFCSNSNEIENLHGMLPSDAELAEFAADVESFLGRGLENKCVGMEELGLVDTKEEECSVGSGKVKVEEEESPLMEMDMGRDDQSFELSFDYETCEEVKEMKVSDLELGNELGEMKENDDDEVKRKKVSLQLDYEAIIIAWASQKSPWTTADKQNLDPDECWHQCMGSCGTAFHHPYGELGGFGIHSVIVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAPPTFPLLNK 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01117 418 MobiDBLite consensus disorder prediction 80 95 - -
Gma20g01117 418 ProSiteProfiles CCT domain profile. 363 405 IPR010402 GO:0005515
Gma20g01117 418 MobiDBLite consensus disorder prediction 62 79 - -
Gma20g01117 418 MobiDBLite consensus disorder prediction 62 116 - -
Gma20g01117 418 Pfam B-box zinc finger 18 60 IPR000315 GO:0008270
Gma20g01117 418 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gma20g01117 418 CDD Bbox1_BBX-like 19 62 - -
Gma20g01117 418 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Gma20g01117 418 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 411 - -
Gma20g01117 418 Pfam CCT motif 363 405 IPR010402 GO:0005515
Gma20g01117 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01117 Gma-Chr20 37835955 37838070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01117 6 405 C2C2-CO-like Transcription Factor Family AT1G25440 45.863 4.65e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma20g01117 zf-B_box 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01117 - - gmx:100817528 841.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02577 10 53185802 53187575 Gma20g01117 20 37835955 37838070 GST