Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01083 ATGTTTCAAGAGAGCAGCGCGACACGGTGGCCGACTCAGCCGACTCAGTGGACTCGCTACCACGACAAGCTCTTCGAGCGGGCTCTGCTGGTCGTGCCGGAGGACCTGCCGGACCGGTGGGAGAAGATCGCCGACCAGGTTCCCGGCAAGTCGGCGGTGGAGGTCAGGGAACACTACGAGGCCCTCGTTCACGACGTCTTCGAGATCGACTCCGGCCGAGTCGAGGTCCCGAGTTACGTCGATGACTCGGTGGCGACACCGCCCAGTGGCGGTGCTGAAATTTCTACTTGGGACAACGCTAATCAGATCTCATTCGGGTCCAAGCCTAAGCAACAAGGCGACAACGAAAGGAAGAAGGGCACGCCTTGGACTGAAGAGGAACACAGGCTgtttctcattgggctcagtaaatttgggaaaggagattggagaagcatttcaagaaatgttgttgtgacaagaacaccaactcaagtagctagccatgcccagaaatactttctccgccagaattcggtgaagaaagagaggaagagatcaagcattcatgacataaccactgtggacagcaactcagttcctgtgcccattgatcagaactgggttcctcctccgggtggttcagtgcagcaatcactgcaatacccatcaagcaACATGCTCGATCAAATGGGTACATTTGGGTATTCAAACTATGGCTTTGGCATGTAA 711 0.3615 MFQESSATRWPTQPTQWTRYHDKLFERALLVVPEDLPDRWEKIADQVPGKSAVEVREHYEALVHDVFEIDSGRVEVPSYVDDSVATPPSGGAEISTWDNANQISFGSKPKQQGDNERKKGTPWTEEEHRLFLIGLSKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDSNSVPVPIDQNWVPPPGGSVQQSLQYPSSNMLDQMGTFGYSNYGFGM 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01083 236 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 12 235 IPR043363 -
Gma20g01083 236 CDD SANT 17 63 IPR001005 -
Gma20g01083 236 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Gma20g01083 236 SMART sant 13 65 IPR001005 -
Gma20g01083 236 SMART sant 119 169 IPR001005 -
Gma20g01083 236 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Gma20g01083 236 Gene3D - 12 76 - -
Gma20g01083 236 Gene3D - 121 173 - -
Gma20g01083 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 171 IPR017930 -
Gma20g01083 236 ProSiteProfiles Myb-like domain profile. 17 63 IPR001005 -
Gma20g01083 236 CDD SANT 122 167 IPR001005 -
Gma20g01083 236 MobiDBLite consensus disorder prediction 102 123 - -
Gma20g01083 236 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Gma20g01083 236 ProSiteProfiles SANT domain profile. 118 171 IPR017884 -
Gma20g01083 236 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 12 235 - -
Gma20g01083 236 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Gma20g01083 236 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01083 Gma-Chr20 37453973 37456207 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma20g01083 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01083 - - gmx:547481 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02607 10 53476408 53478199 Gma20g01083 20 37453973 37456207 GST