Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01061 ATGGCGGCATCATCTTCCTCAGCGTCGCTCTTTGGATTTAGAGAAGAGGATCAGAATCAGATGAAGCAACAACATTCCCTGACACCATCTTCATCAACAACACCAGCTGCACCCCCACCCCAGAAGAAAAAGAGAAACCAACCTGGAACACCATATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAGAAACACTACTCTCGCAAACACGGTGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGCACCAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATCACCCACAGGGCCTTCTGCGATGCACTGGCTCAAGAGAGTGCAAGACAGCCACCTAGCCTTAGCGGCGGAGGAATTGGCAGTCATCTGTACGGAAGCACCACCAACATGGCCTTAAACCTATCTCAGGTCGGTTCTCAAATCTCAACCATGCAAGACCCTAACGCCCAGCCCACCGAGCTCCTCCGCCTGGGCGCCGCCTCCGGTCGAACCGGCCAGTTCGACCACATCCTCGGTTCACCCTTCCGACCGTCGAACCAACAACAACAACAACAACCTTTCTTCATGTCCTCCGAACCCAACCAAACCTACCACCACCCCGACCAAAACAAACCCTTCCAACAAGGGTTAATGCAGTTGTCTGATCACCTTAACAACAACAGCCACCACAATAATTCACCCTTCAGCCTTCCCTTTCTCTCCAACAACACAAGCAACGCTTCGTTCTCTGAACACTTCAACAATGCCAATGGAGGAGGAGGcaacaacaacaacaacaacaacaacGAGGGCACTAACTACTTCGCAACTTCAAGTGCACCTTCTCTCTTCAGCAACAGTGTCAATGCCAGTGCCTTATCTCACATGTCCGCAACTGCACTGCTTCAGAAAGCAGCACAAATGGGTGCAACTACGAGCAACGGCGGCACCGCTTCGCTGTTGAAAAGCTTCGGAAGCGCGTCCTCCAGCAGCGGCGGCGGCGGCTCGAAACTGGTGAATGCTGCAAACTACGTCAGTGGCATGTTCGGAGGGAATAATCACGTGAACGAACAGAGTAACAGTAACCTCCAAGACCTGATGAACTCGTTCGCTGTTGGTGGAAACTCTTCCATTTTCGAAGATGGGTTTGAAGCATATGAACATAGTAACAATAACAGTAATAGGGACCCAAAAGTGCACGCAATGAGTGGAAGTAGCAGCAGCATTGGAGGGTCTGATAGGCTCACCCGCGATTTTCTGGGTGTTGGTCAGATAGTGAGGGGAATGAGTGGGAGTGGAGGAGTTGCGCAGAGAGAACAACAGCAGCAACATGGCTTCAACTTGAGTTCTTTGGAGGCAGAAAGATATAATAATAATAGCAATAATGCTGCGCCGTCATCAGGGCAAGCTTTTGGAGGTGGTGGAGGGAATTTTCAGTGA 1704 0.493 MAASSSSASLFGFREEDQNQMKQQHSLTPSSSTTPAAPPPQKKKRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPPSLSGGGIGSHLYGSTTNMALNLSQVGSQISTMQDPNAQPTELLRLGAASGRTGQFDHILGSPFRPSNQQQQQQPFFMSSEPNQTYHHPDQNKPFQQGLMQLSDHLNNNSHHNNSPFSLPFLSNNTSNASFSEHFNNANGGGGNNNNNNNNEGTNYFATSSAPSLFSNSVNASALSHMSATALLQKAAQMGATTSNGGTASLLKSFGSASSSSGGGGSKLVNAANYVSGMFGGNNHVNEQSNSNLQDLMNSFAVGGNSSIFEDGFEAYEHSNNNSNRDPKVHAMSGSSSSIGGSDRLTRDFLGVGQIVRGMSGSGGVAQREQQQQHGFNLSSLEAERYNNNSNNAAPSSGQAFGGGGGNFQ 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01061 567 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 527 - -
Gma20g01061 567 SMART c2h2final6 147 167 IPR013087 -
Gma20g01061 567 SMART c2h2final6 112 142 IPR013087 -
Gma20g01061 567 SMART c2h2final6 71 93 IPR013087 -
Gma20g01061 567 Gene3D Classic Zinc Finger 54 119 - -
Gma20g01061 567 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 527 - -
Gma20g01061 567 MobiDBLite consensus disorder prediction 1 55 - -
Gma20g01061 567 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Gma20g01061 567 MobiDBLite consensus disorder prediction 477 498 - -
Gma20g01061 567 Gene3D Classic Zinc Finger 125 204 - -
Gma20g01061 567 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Gma20g01061 567 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Gma20g01061 567 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Gma20g01061 567 MobiDBLite consensus disorder prediction 1 32 - -
Gma20g01061 567 MobiDBLite consensus disorder prediction 545 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01061 Gma-Chr20 37276149 37280469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01061 41 522 IDZ Gene Family AT2G02070 49.358 3.12e-137 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g01061 zf-C2H2_jaz 3.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01061 K25870 - gmx:100799389 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02627 10 53612826 53618710 Gma20g01061 20 37276149 37280469 GST