Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01051 ATGGCTGCTCATCGTCCAGGGAGGGATGCTACCCTGCCAATCCTTTTCTTCAAGATTATTCTTAAAACTAATCTTGAAAGGCTTAAAATACCGAATAAGTTTACAAGGAGATATGGAGGTGGTTTGTCAAATCCAGTGTTTCTCAGACCTCCGGATTCCAAGGAATGGGAAGTGCATTGGACAAAAGAGAATGGTGAGGTTTGGTTTCAAAAGGGTTGGAAAGAGTTTGTTGAATATTATTCCCTGGAACACGGACATTTTGTCTTGTTTAAGTACAATGGAACATCCCTTATTGATGTACTCATACTTGATCGTAGTGCCATAGAAATTGATGATGAAATGGGCACTGTTGATCCAAATGTGGAAAAGTTGCATGCAGATAAGGGTGAGAAGGCTATTGAAAGAACTTCATCTTTGAATACACCCAAGCTACTCAGAGCTAAGAAAGTAGCAAGGAATTTTGTCTCGAACAATGTTTTTTTCACAGTCGTCATAGCCCGGCCTCAGTTGGAAGAAGGTGCATGGGTATGGTTTAACATTGAATTAATTAAAGTCATTAAAGTTGTTCCCAAGTTCTTGGATATGGAGAGGAAAAAACAGAATGTGATGTTGCAGATTGAGAATCGGATGTGGCCTGTGAAGTTGACAAATGGTGGTGGTGATATGCAATATGACCGGTTCACTTCTGGTTGGTCTTTGTTTGCAAAAGAGAGTAAATTGCAAGCTGGTGACATTTGTATCTTTGAGTTGATTGACCCCGATGGTCCAACTCTTGAAGTTCATATTACAAAAGCTAGATAG 801 0.3983 MAAHRPGRDATLPILFFKIILKTNLERLKIPNKFTRRYGGGLSNPVFLRPPDSKEWEVHWTKENGEVWFQKGWKEFVEYYSLEHGHFVLFKYNGTSLIDVLILDRSAIEIDDEMGTVDPNVEKLHADKGEKAIERTSSLNTPKLLRAKKVARNFVSNNVFFTVVIARPQLEEGAWVWFNIELIKVIKVVPKFLDMERKKQNVMLQIENRMWPVKLTNGGGDMQYDRFTSGWSLFAKESKLQAGDICIFELIDPDGPTLEVHITKAR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01051 266 PANTHER TRANSCRIPTIONAL FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 11 264 - -
Gma20g01051 266 CDD B3_DNA 15 104 IPR003340 GO:0003677
Gma20g01051 266 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Gma20g01051 266 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 11 264 IPR039218 -
Gma20g01051 266 Pfam B3 DNA binding domain 23 95 IPR003340 GO:0003677
Gma20g01051 266 Pfam B3 DNA binding domain 198 264 IPR003340 GO:0003677
Gma20g01051 266 ProSiteProfiles B3 DNA-binding domain profile. 202 266 IPR003340 GO:0003677
Gma20g01051 266 SUPERFAMILY DNA-binding pseudobarrel domain 158 263 IPR015300 -
Gma20g01051 266 CDD B3_DNA 191 264 IPR003340 GO:0003677
Gma20g01051 266 Gene3D - 13 107 IPR015300 -
Gma20g01051 266 Gene3D - 143 266 IPR015300 -
Gma20g01051 266 SUPERFAMILY DNA-binding pseudobarrel domain 15 106 IPR015300 -
Gma20g01051 266 SMART B3_2 160 266 IPR003340 GO:0003677
Gma20g01051 266 SMART B3_2 16 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01051 Gma-Chr20 37148527 37159694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01051 16 127 B3 DNA Binding Superfamily AT1G49475 38.596 3.01e-18 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma20g01051 B3 8e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01051 - - gmx:102661781 273.478