Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01050 ATGAAGCCTCCAGATGGCACTGAATGGGAAGTACAATGGACCAAACAGAATGGTGAGGTTTGGTTTGAAAAGGGTTGGAAGGAATTTGTTGAAAATTATTTCCTGAATCACGGCCATTTGGTTTTATTCAACTATGAAGGGACTTCTCAGATTCATGTACTCATACTTGACCATACTACACTAGAAATTCACTACCCTTCTTCTCATACTCGTGAAGAAAATGACAACCTTGTCCAGAGTGATGATGAATCAGTTCAAGTTTTGGAGGAAGGGCCTGACAAGAATGCTGAAGAAAATGACAACCTTGTCAACAAGTCAAGGTTTTGGATGAAGGGCCTGACCAGAATATTGCTGATGAATCAGTTCAAGTTTTGGATGAATGGCATCACCAGAATGCTACACAAATCAAAGTATGTACCAGATTTGAAAAGCTATATTGGGAACACGAAGATTGTGATGCTGCAAGTTGGGGAGAATCATGGAGTGTGA 489 0.4029 MKPPDGTEWEVQWTKQNGEVWFEKGWKEFVENYFLNHGHLVLFNYEGTSQIHVLILDHTTLEIHYPSSHTREENDNLVQSDDESVQVLEEGPDKNAEENDNLVNKSRFWMKGLTRILLMNQFKFWMNGITRMLHKSKYVPDLKSYIGNTKIVMLQVGENHGV 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01050 162 Gene3D - 1 60 IPR015300 -
Gma20g01050 162 SUPERFAMILY DNA-binding pseudobarrel domain 3 66 IPR015300 -
Gma20g01050 162 PANTHER B3 DOMAIN-CONTAINING 2 100 - -
Gma20g01050 162 Pfam B3 DNA binding domain 3 57 IPR003340 GO:0003677
Gma20g01050 162 CDD B3_DNA 4 57 IPR003340 GO:0003677
Gma20g01050 162 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 100 - -
Gma20g01050 162 ProSiteProfiles B3 DNA-binding domain profile. 1 59 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01050 Gma-Chr20 37146668 37147911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01050 1 83 B3 DNA Binding Superfamily AT1G49475 40.964 1.21e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma20g01050 B3 1.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01050 - - gmx:102661645 345.895