Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01048 ATGGGCTGGGCATTTCGTCTCCATTTCTTTGTTTGGCCCAGCACCAGTGACATTCATTTTTTCAAGAGGATTGAAGAAGATGCCATTCGAAATGGGGAGCTGAGGATTCCTCGAAGTTTTGTGAACAAATGTTGGGAAGGAATGTCAAACCCAGTAGTCCTTCTGCTTCGTAACGGTGCTGAATGGAAAGTGAAATGGAAAAAACTTGATGTTGATGTTTGGTTGATCGATGATTGGAAGGAATTCGCAGACTTTTGTTGTTTGGATCAGGACCATCTTTTGGTGTTCAAATACATGGGGAAGTCACGGTTTCAGGTTGTAATTTTTTATCAAAATGGCTTGGAAATGCAGTACCCTTTGATGGAAGAAACAATAGATGGTAATTCTTTATGCCAGCCTAAGAGGGCAAAATCTCCTTTACCATTTTCTTCTTCTATTAAGAAGGTGAAGACCAACCCAAGAAAGGAACCTTCTAGTTATCCAGGCCATGACCATGATGTTAAAACTGAACCTGCACAATCTCAAAGGAGAAAGGTTGAGTTGTCTAAAAAATTCCATGCAGATGATCTTGATGATGCAAAGCCCAAAAAAAGAGGAAGAGGGATGATGAATGCAAAAAGGAGATGCTCTAACTCTAATGCTTTAAAAAGTAGCACTGCTTTAGAGAGAGCCAAGGCTTTCCGCTCTGAGAATCCCTTCTTCATTCGTGAAATGCATCCATCATACATTCATAAATATATTATGGTCATGCCAGGCAATTTCTTAACAGAAGACCAACAAAAGGAGAATGACAGTGTTACTCTTTGGATCTCCGAGGAAAGAGCTTGGCATGTCAAGTTCTATACGAATCGTAGCAGTGGACAAATAAATCTTAGTACTGGTTGGGTGGATTTTGTAAAGGATAATAACTTGAAAATAGGGAATGTGTGTGTTTTTGAGCAAATAAAGAAAACAAGAATTTCATTTAGAGTTTTTATTTTCCGTGACGGAGAAGAATCTAGTCCTTCCAACTTTTCAGATTCTGAATTTCGTGGATGCAACAACGAAGTGTCTGAGAATCACTTCACCCTCTCGATCAAGCCTTGTCAATTCTATTGTATGAACGTACCAAAGAAATTCATCAGAAACCATGAGATGGATGGTATAAATGAAGTGACGCTGCAAGTTGGGAAGAGATCATGGAATGTGAAGTTAGACTGTTACGGTAGGTTTACTTCGGGTTTGCATGACTTTATGAGTCAACATAATGTGGAGGCTGGAGATGTTATTCACTTTGAGTTGATCGATAAGAAGAAATTTGTGTTTCAAGTTAGAGTTACGAGATGCATCAGCATCGATTTTGAGTTGCTGTAA 1353 0.391 MGWAFRLHFFVWPSTSDIHFFKRIEEDAIRNGELRIPRSFVNKCWEGMSNPVVLLLRNGAEWKVKWKKLDVDVWLIDDWKEFADFCCLDQDHLLVFKYMGKSRFQVVIFYQNGLEMQYPLMEETIDGNSLCQPKRAKSPLPFSSSIKKVKTNPRKEPSSYPGHDHDVKTEPAQSQRRKVELSKKFHADDLDDAKPKKRGRGMMNAKRRCSNSNALKSSTALERAKAFRSENPFFIREMHPSYIHKYIMVMPGNFLTEDQQKENDSVTLWISEERAWHVKFYTNRSSGQINLSTGWVDFVKDNNLKIGNVCVFEQIKKTRISFRVFIFRDGEESSPSNFSDSEFRGCNNEVSENHFTLSIKPCQFYCMNVPKKFIRNHEMDGINEVTLQVGKRSWNVKLDCYGRFTSGLHDFMSQHNVEAGDVIHFELIDKKKFVFQVRVTRCISIDFELL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01048 450 SUPERFAMILY DNA-binding pseudobarrel domain 227 328 IPR015300 -
Gma20g01048 450 CDD B3_DNA 365 441 IPR003340 GO:0003677
Gma20g01048 450 PANTHER B3 DOMAIN-CONTAINING 15 329 - -
Gma20g01048 450 ProSiteProfiles B3 DNA-binding domain profile. 233 330 IPR003340 GO:0003677
Gma20g01048 450 PANTHER B3 DOMAIN-CONTAINING 348 441 - -
Gma20g01048 450 CDD B3_DNA 232 328 IPR003340 GO:0003677
Gma20g01048 450 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 348 441 - -
Gma20g01048 450 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 15 329 - -
Gma20g01048 450 MobiDBLite consensus disorder prediction 135 215 - -
Gma20g01048 450 CDD B3_DNA 19 109 IPR003340 GO:0003677
Gma20g01048 450 Pfam B3 DNA binding domain 367 438 IPR003340 GO:0003677
Gma20g01048 450 Pfam B3 DNA binding domain 21 109 IPR003340 GO:0003677
Gma20g01048 450 Pfam B3 DNA binding domain 233 327 IPR003340 GO:0003677
Gma20g01048 450 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Gma20g01048 450 SMART B3_2 20 112 IPR003340 GO:0003677
Gma20g01048 450 SMART B3_2 355 441 IPR003340 GO:0003677
Gma20g01048 450 SMART B3_2 234 330 IPR003340 GO:0003677
Gma20g01048 450 SUPERFAMILY DNA-binding pseudobarrel domain 18 119 IPR015300 -
Gma20g01048 450 Gene3D - 13 113 IPR015300 -
Gma20g01048 450 MobiDBLite consensus disorder prediction 149 199 - -
Gma20g01048 450 SUPERFAMILY DNA-binding pseudobarrel domain 354 446 IPR015300 -
Gma20g01048 450 Gene3D - 214 331 IPR015300 -
Gma20g01048 450 Gene3D - 341 444 IPR015300 -
Gma20g01048 450 ProSiteProfiles B3 DNA-binding domain profile. 352 441 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01048 Gma-Chr20 37125916 37133495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01048 20 328 B3 DNA Binding Superfamily AT3G18990 28.235 2.92e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma20g01048 B3 1.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01048 - - ccaj:109795879 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02637 10 53719658 53731621 Gma20g01048 20 37125916 37133495 GST