Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01044 ATGGATATCAGTTTTTGTTTCTTCTGCTTCTTCTGGTCTGTTTTTTCTTCAATTTTGCTCTTGCTTTTAGTCAAAGGAAGTAACCATAGCCACTTTGCTTTTGTGAGCTCAAAGAGGAAGTTCCACTATCATCATCCAGGTGACATGAACATCATCATGCAAAACTTAGTAGAGAGACTAAGACCCCTCGTGGGTTTGAACGGATGGGACTATTGTATCTACTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTGGGATGCTGTTGTGCTGGCACTGAAAGCAATCAAAATGCTGGGGAAGAACATATTTTCCCTGTCTCTTCTGTGGCCTCATGCAGGGATAGTACATATCCACACCCCAGAACAAAGCCCTGCGATCTTCTTTCACAGCTTTCCACTTCCATACCCATAGATAATTCTGGGATTCATGCACAGACCCTATTAACAAACCAACCCAACTGGGTGAACTATTCCAATGGCATGGATCCTAACATCTTGGAAGAAACAATTGGGACCCAGGTTTTGATTTCGGTGCCAGGTGGACTAGTTGAACTGTTTGTAACTAAACAAGTGCCTGAAGATCATCAACTAATAGATTATGTCATAAACCAGTGCATTGAAGCCGTGAACCACTCAATGAGCTTCCACATTGACGAGAATTCAATGAGCAACATGCAATCAAACCCACTTATAGGCGATGAAAATGAAGGGAACAACAACAGCAGGGACACTTCCACCCTTCAGAACATGTCATCACAATGGACCTCCGCAGTATTGCAAACCAACCAAGAAGATCAGGAGCATGAGCATGAGCATGACACGTATCAGAAAAGCCTCATGACAACAACGGATTCACAATACGTGGAGCCTTTGGAGGCAAAAGAGAAGCAAGAGGAGGACAAGGACTTGCTGAAAAACGTTGTTGGTAGATCAGATTCAATGTCAGATTGCAGTGACCAGAACGAAGAAGAGGAAGATGGAAAGTATAGGAGGAGGAATGGGAAAGGGAACCAATCCAAGAACCTTGTGGCTGAGAGGAAGAGAAGGAAGAAGCTCAATGATAGGTTATATAACCTTCGTTCTTTGGTTCCTAGGATCTCTAAGCTGGATAGGGCATCCATTCTTGGAGATGCCATTGAGTATGTGAAGGATTTGCAGAAGCAAGTGAAGGAGCTCCAAGATGAGCTTGAGGAGAATGCAGACACTGAAAGCAACTGCATGAATTGTGTAAGTGAACTTGGGCCAAATGCTGAACATGATAAGGCCCAAACTGGGTTGCATGTGGGAACATCAGGGAATGGCTATGTCTCCAAACAAAAGCAGGAAGGTACTACTGTCATTGACAAGCAGACCCAGCAGATGGAGCCGCAAGTGGAAGTGGCTCTGATAGATGGGAATGAGTATTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGATGGGTTTGTGAAACTGATGGAGGCATTGAACACTATTGGCATGGATGTAGTGCATGCCACGGTAACCAGCCACACGGGACTCGTGTCAAATGTTTTTAAAGTGGAAAAAAAGGATAGTGAAACGGTTGAAGCTGAAGATGTAAGAGACTCACTGCTAGAGCTTATGCGGAACCGTTACAGAGGGTGGACTCATGAGATGACAGCAACGTCGGGAAATAGTGTGGAAAGCGATCAACATCAACTCCACAACCACAACCAGATGGGTGCCTACCCGCACGAGTTTCATAGTTAA 1734 0.4458 MDISFCFFCFFWSVFSSILLLLLVKGSNHSHFAFVSSKRKFHYHHPGDMNIIMQNLVERLRPLVGLNGWDYCIYWKLSEDQRFLEWLGCCCAGTESNQNAGEEHIFPVSSVASCRDSTYPHPRTKPCDLLSQLSTSIPIDNSGIHAQTLLTNQPNWVNYSNGMDPNILEETIGTQVLISVPGGLVELFVTKQVPEDHQLIDYVINQCIEAVNHSMSFHIDENSMSNMQSNPLIGDENEGNNNSRDTSTLQNMSSQWTSAVLQTNQEDQEHEHEHDTYQKSLMTTTDSQYVEPLEAKEKQEEDKDLLKNVVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEENADTESNCMNCVSELGPNAEHDKAQTGLHVGTSGNGYVSKQKQEGTTVIDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPDGFVKLMEALNTIGMDVVHATVTSHTGLVSNVFKVEKKDSETVEAEDVRDSLLELMRNRYRGWTHEMTATSGNSVESDQHQLHNHNQMGAYPHEFHS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01044 577 MobiDBLite consensus disorder prediction 222 283 - -
Gma20g01044 577 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 57 203 IPR025610 -
Gma20g01044 577 SMART finulus 344 393 IPR011598 GO:0046983
Gma20g01044 577 CDD bHLH_AtAMS_like 341 406 - -
Gma20g01044 577 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 143 545 - -
Gma20g01044 577 Gene3D - 326 403 IPR036638 GO:0046983
Gma20g01044 577 Coils Coil 377 407 - -
Gma20g01044 577 MobiDBLite consensus disorder prediction 308 349 - -
Gma20g01044 577 CDD ACT_UUR-ACR-like 472 536 - -
Gma20g01044 577 Pfam Helix-loop-helix DNA-binding domain 345 388 IPR011598 GO:0046983
Gma20g01044 577 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 401 IPR036638 GO:0046983
Gma20g01044 577 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 143 545 - -
Gma20g01044 577 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Gma20g01044 577 MobiDBLite consensus disorder prediction 222 264 - -
Gma20g01044 577 MobiDBLite consensus disorder prediction 265 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01044 Gma-Chr20 37093131 37096343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01044 53 550 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.604 2.71e-140 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma20g01044 bHLH-MYC_N 6.5e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01044 - - gmx:100810576 1041.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02640 10 53764688 53768324 Gma20g01044 20 37093131 37096343 GST