Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma20g01040 | ATGGCGTTTTGGCACCGAATCCGAAACCCCAACCTCAAAACCCTGTGCATCCAATTCCAACGATGTTACATTCACCTTCCGCATGCTTCCACCCCCAAACCCTTCCCTGTGGACATTCCACATCAGAATTCGGTGTTTCATGGCAGACCCACAAGTGTTTTCAATACCGTGAGGTTCTTCGCTGCACCTCTTCAGTATCAGGTAAAGCACAAGAATGAGGAGGATTCGGGTGATCTACGGTTGAATGAGAAAATCAAAGCTCCATATGTCAGGCTTGTGGTGGATGATGGGCATCATTCAATAGTGCCAAGGTTTGAAGCATTGGAGCGTGCCAAGACGCTTAAACTTGATTTAGTTGAGGTTGATAAAAATGCTAAGCCACCTGTCTGTAAAATTATGGACTTCCACAAGCAAATGTATAAGCGGCAAGAAAGGGAAAAGGAGCGTGCTAAAAGCAAGGCTGAGATGACACTGCGAAAGGATGTTAAGGAAGTGCGATTTTCTGAAAAAACTGAAGCAAAAGATCTGAAGAACAAAGCAGATATGATCAAGAAGTTAATGGAGAAGGGTTACCGAGTGAAGTGCAAGGTATCAGGCAAGGAAGATCAGGACTTGACAGTATTATTTTCTCCTATTCTTGCTCTGATGGAAGATGTCTGTATTGTGGAAAGTGGACCACATATGGGAAAAAAAGATGCATTTATGATTGTCAGACACATTAAGTATGGGTTATCTAAGAAAGGTGGGAAAAAATTGCAAAATGCAACAAACGATAATTCTCAGGAGGGTGATATGGAGAAATCAACTGCCAATTCTAGTGATTCCATTGAATATGAGAGTCATGCTGAATCTGGGTTTGAAACGGAGGAGGAGGTGCTTTCTGATGGTGACAAGCTTTCTAAAAGTTCTTTGTCTGTATTTAGCAACAATGTGAACATGACTGGCTCTCATAATAATCAAACAAATGCTGCTCCAGAAGCATCTCCTGTCTCCGAAAATAGGTATAGGAGAACTAATCATCATGGTGAGAATAACGTCCAATCTAATGCACACGTGCCTCCTGCTGTGACTGAGAACAGGTACAAAAGAGTAGAGCCAAGAGGCAGATTCCAACAAACATCAAATAATGCAGGTATGAACTATCAAGGTCCCGGAACAAGAGATGCATTCAGGTCACCACTGCCGAATTGGAATCAGACAAGGCATGCGCCGGTAAATGCTAACGTTAATCCAAGAATAGAAAACAACAGGCAAGCTTTTACACTTCCTGGATCAAGACACTCAATGCCTTCCCATGAGAATATCCGGAGTCCTCCTCCTAATGCTCCTAATACTCCTAGACCTGGGCTTCGCTCCAGAAGGGTTACGATGGATTTTGACGAGTATGAGTATTTAGAGAAAGCAGTTGAAAACCCTGAAGTTAATCACAGGGCTAATGGTGGGGACAAAAATGTGAAATCCGAAGAGAGAGGGCGTAATGGGAGTTCAAAGCATAAGGATGATGATGATGATGATGTTGTTGATCTCCATCCCAGGCATTCAAAATCTGGAGACAATTCTCGTGATCGCGAGAGGCAGAGAGAAAGAGGCTCAACTCTTCATGGTTCAAAGTCCAGAGATGGAGACAAGGACAGAAACTCCGGGGGCAGCAGggataggaggagggatagggacagagaccatgagaacaaggataggaagagagacaaggagagagaccatggggacaaggatatgaagagagatagggagagagacAGAGATCGCAATCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGAGTGAGGCTGAGCAGGAACAGCGAAGCAGAAGTAGATCTGATAGGCTTCGAACTGATCTGGATGACAAAGACAGAGAGGCAAGTCGTGACAGGGAGTATAGAGATAGAGAAAGAAGTCGGGATAAGGATTACAAAGACAGAGAAAGGGTGAGGGAATCAAGGGAACATGATAGAGAAAACAGACGGCATAAAGAGAAAAAGGAAGAAACAACAGAACCTGCTGATCCTGAAAGAGATCAAAGAGCTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATTTGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGATCGCAATTCAAGACGTTCCAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCCGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGACTCACTGGACTTATAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGTAATCTGCATATCAGTATTACTGAAGCTGATATTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAATTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCATGTCCTTGAATGCATGTTCTCGAGCAATGCTCATGCAGAAGTTGGATCGTAGTGGTACTGCATCAAGCATGGTTGGTTCCCTCGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCGACAGGAAACATACTCGCAGCTGCGCCTGTTGGTGAATTGGCAGGTGGAGGTCTCCAAATACCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTGCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAAAGATGAGATTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGCTTGGAACGTTAAAACACATATATGTTGACAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCAGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCTCAATCATATGAGGATAAATTCCCAGACAGCAGATAA | 3171 | 0.4213 | MAFWHRIRNPNLKTLCIQFQRCYIHLPHASTPKPFPVDIPHQNSVFHGRPTSVFNTVRFFAAPLQYQVKHKNEEDSGDLRLNEKIKAPYVRLVVDDGHHSIVPRFEALERAKTLKLDLVEVDKNAKPPVCKIMDFHKQMYKRQEREKERAKSKAEMTLRKDVKEVRFSEKTEAKDLKNKADMIKKLMEKGYRVKCKVSGKEDQDLTVLFSPILALMEDVCIVESGPHMGKKDAFMIVRHIKYGLSKKGGKKLQNATNDNSQEGDMEKSTANSSDSIEYESHAESGFETEEEVLSDGDKLSKSSLSVFSNNVNMTGSHNNQTNAAPEASPVSENRYRRTNHHGENNVQSNAHVPPAVTENRYKRVEPRGRFQQTSNNAGMNYQGPGTRDAFRSPLPNWNQTRHAPVNANVNPRIENNRQAFTLPGSRHSMPSHENIRSPPPNAPNTPRPGLRSRRVTMDFDEYEYLEKAVENPEVNHRANGGDKNVKSEERGRNGSSKHKDDDDDDVVDLHPRHSKSGDNSRDRERQRERGSTLHGSKSRDGDKDRNSGGSRDRRRDRDRDHENKDRKRDKERDHGDKDMKRDRERDRDRNRDQERDRRDRGSEAEQEQRSRSRSDRLRTDLDDKDREASRDREYRDRERSRDKDYKDRERVRESREHDRENRRHKEKKEETTEPADPERDQRAVFAYQISLKADERDVFEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLIGPYSGGARKLYVGNLHISITEADIRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEFGGNTGDFDDDEGGGMSLNACSRAMLMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNILAAAPVGELAGGGLQIPTATIPSIDTIGVASECLMLKNMFDPKDEIEPDFDLDIKEDVEAECSKLGTLKHIYVDKKSAGFVYLRFEDTQSAISAQQALHGRWFAGKMITASFMVPQSYEDKFPDSR | 1056 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 250 | 279 | - | - | |
Gma20g01040 | 1056 | Gene3D | - | 613 | 767 | IPR012677 | - | |
Gma20g01040 | 1056 | SUPERFAMILY | Translation initiation factor IF3, C-terminal domain | 161 | 241 | IPR036788 | GO:0006413 | |
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 280 | 297 | - | - | |
Gma20g01040 | 1056 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 877 | 980 | IPR029123 | - | |
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 310 | 331 | - | - | |
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 310 | 328 | - | - | |
Gma20g01040 | 1056 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 682 | 759 | IPR000504 | GO:0003723 | |
Gma20g01040 | 1056 | TIGRFAM | infC: translation initiation factor IF-3 | 81 | 237 | IPR001288 | GO:0003743|GO:0006413 | |
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 421 | 435 | - | - | |
Gma20g01040 | 1056 | CDD | RRM1_RBM39_like | 684 | 755 | - | - | |
Gma20g01040 | 1056 | Gene3D | - | 958 | 1056 | IPR012677 | - | |
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 247 | 297 | - | - | |
Gma20g01040 | 1056 | SUPERFAMILY | RNA-binding domain, RBD | 786 | 1049 | IPR035979 | GO:0003676 | |
Gma20g01040 | 1056 | PANTHER | CC1-LIKE SPLICING FACTOR | 457 | 1052 | - | - | |
Gma20g01040 | 1056 | Coils | Coil | 133 | 160 | - | - | |
Gma20g01040 | 1056 | Pfam | Translation initiation factor IF-3, N-terminal domain | 81 | 148 | IPR019814 | GO:0003743|GO:0006413 | |
Gma20g01040 | 1056 | CDD | RRM3_RBM39_like | 961 | 1043 | - | - | |
Gma20g01040 | 1056 | SMART | rrm1_1 | 683 | 755 | IPR000504 | GO:0003723 | |
Gma20g01040 | 1056 | SMART | rrm1_1 | 787 | 859 | IPR000504 | GO:0003723 | |
Gma20g01040 | 1056 | SMART | rrm1_1 | 963 | 1041 | IPR000504 | GO:0003723 | |
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 421 | 452 | - | - | |
Gma20g01040 | 1056 | Gene3D | - | 782 | 889 | IPR012677 | - | |
Gma20g01040 | 1056 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 576 | 1054 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Gma20g01040 | 1056 | Gene3D | - | 158 | 244 | IPR036788 | GO:0006413 | |
Gma20g01040 | 1056 | SUPERFAMILY | RNA-binding domain, RBD | 674 | 774 | IPR035979 | GO:0003676 | |
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 466 | 680 | - | - | |
Gma20g01040 | 1056 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 786 | 863 | IPR000504 | GO:0003723 | |
Gma20g01040 | 1056 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 962 | 1045 | IPR000504 | GO:0003723 | |
Gma20g01040 | 1056 | SUPERFAMILY | Translation initiation factor IF3, N-terminal domain | 79 | 151 | IPR036787 | GO:0003743|GO:0006413 | |
Gma20g01040 | 1056 | MobiDBLite | consensus disorder prediction | 466 | 681 | - | - | |
Gma20g01040 | 1056 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 457 | 1052 | - | - | |
Gma20g01040 | 1056 | Gene3D | - | 72 | 148 | IPR036787 | GO:0003743|GO:0006413 | |
Gma20g01040 | 1056 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 692 | 751 | IPR000504 | GO:0003723 | |
Gma20g01040 | 1056 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 986 | 1038 | IPR000504 | GO:0003723 | |
Gma20g01040 | 1056 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 788 | 857 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma20g01040 | Gma-Chr20 | 37042389 | 37060982 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma20g01040 | 683 | 849 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.586 | 8.64e-14 | 73.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma20g01040 | K13091 | - | gmx:100795336 | 974.156 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma10g02646 | 10 | 53804759 | 53813423 | Gma20g01040 | 20 | 37042389 | 37060982 | GST |