Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01040 ATGGCGTTTTGGCACCGAATCCGAAACCCCAACCTCAAAACCCTGTGCATCCAATTCCAACGATGTTACATTCACCTTCCGCATGCTTCCACCCCCAAACCCTTCCCTGTGGACATTCCACATCAGAATTCGGTGTTTCATGGCAGACCCACAAGTGTTTTCAATACCGTGAGGTTCTTCGCTGCACCTCTTCAGTATCAGGTAAAGCACAAGAATGAGGAGGATTCGGGTGATCTACGGTTGAATGAGAAAATCAAAGCTCCATATGTCAGGCTTGTGGTGGATGATGGGCATCATTCAATAGTGCCAAGGTTTGAAGCATTGGAGCGTGCCAAGACGCTTAAACTTGATTTAGTTGAGGTTGATAAAAATGCTAAGCCACCTGTCTGTAAAATTATGGACTTCCACAAGCAAATGTATAAGCGGCAAGAAAGGGAAAAGGAGCGTGCTAAAAGCAAGGCTGAGATGACACTGCGAAAGGATGTTAAGGAAGTGCGATTTTCTGAAAAAACTGAAGCAAAAGATCTGAAGAACAAAGCAGATATGATCAAGAAGTTAATGGAGAAGGGTTACCGAGTGAAGTGCAAGGTATCAGGCAAGGAAGATCAGGACTTGACAGTATTATTTTCTCCTATTCTTGCTCTGATGGAAGATGTCTGTATTGTGGAAAGTGGACCACATATGGGAAAAAAAGATGCATTTATGATTGTCAGACACATTAAGTATGGGTTATCTAAGAAAGGTGGGAAAAAATTGCAAAATGCAACAAACGATAATTCTCAGGAGGGTGATATGGAGAAATCAACTGCCAATTCTAGTGATTCCATTGAATATGAGAGTCATGCTGAATCTGGGTTTGAAACGGAGGAGGAGGTGCTTTCTGATGGTGACAAGCTTTCTAAAAGTTCTTTGTCTGTATTTAGCAACAATGTGAACATGACTGGCTCTCATAATAATCAAACAAATGCTGCTCCAGAAGCATCTCCTGTCTCCGAAAATAGGTATAGGAGAACTAATCATCATGGTGAGAATAACGTCCAATCTAATGCACACGTGCCTCCTGCTGTGACTGAGAACAGGTACAAAAGAGTAGAGCCAAGAGGCAGATTCCAACAAACATCAAATAATGCAGGTATGAACTATCAAGGTCCCGGAACAAGAGATGCATTCAGGTCACCACTGCCGAATTGGAATCAGACAAGGCATGCGCCGGTAAATGCTAACGTTAATCCAAGAATAGAAAACAACAGGCAAGCTTTTACACTTCCTGGATCAAGACACTCAATGCCTTCCCATGAGAATATCCGGAGTCCTCCTCCTAATGCTCCTAATACTCCTAGACCTGGGCTTCGCTCCAGAAGGGTTACGATGGATTTTGACGAGTATGAGTATTTAGAGAAAGCAGTTGAAAACCCTGAAGTTAATCACAGGGCTAATGGTGGGGACAAAAATGTGAAATCCGAAGAGAGAGGGCGTAATGGGAGTTCAAAGCATAAGGATGATGATGATGATGATGTTGTTGATCTCCATCCCAGGCATTCAAAATCTGGAGACAATTCTCGTGATCGCGAGAGGCAGAGAGAAAGAGGCTCAACTCTTCATGGTTCAAAGTCCAGAGATGGAGACAAGGACAGAAACTCCGGGGGCAGCAGggataggaggagggatagggacagagaccatgagaacaaggataggaagagagacaaggagagagaccatggggacaaggatatgaagagagatagggagagagacAGAGATCGCAATCGTGACCAAGAAAGGGACAGAAGGGACCGTGGGAGTGAGGCTGAGCAGGAACAGCGAAGCAGAAGTAGATCTGATAGGCTTCGAACTGATCTGGATGACAAAGACAGAGAGGCAAGTCGTGACAGGGAGTATAGAGATAGAGAAAGAAGTCGGGATAAGGATTACAAAGACAGAGAAAGGGTGAGGGAATCAAGGGAACATGATAGAGAAAACAGACGGCATAAAGAGAAAAAGGAAGAAACAACAGAACCTGCTGATCCTGAAAGAGATCAAAGAGCTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTATTTGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGATCGCAATTCAAGACGTTCCAAGGGTGTTGGGTATATTGAGTTTTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGCCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCCGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTAATGGACTCACTGGACTTATAGGCCCTTATTCTGGGGGAGCAAGAAAGCTGTATGTTGGTAATCTGCATATCAGTATTACTGAAGCTGATATTCGTAGGGTGTTTGAAGCATTTGGTCAGGTTGAGCTAGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCAAGAAATGCTCAGAGCTTGAATGGTCAATTAGAGATTGGTGGTAGGACAATCAAGGTATCAGCTGTTACTGATCAATCTGGAATGCAAGAATTTGGAGGAAATACTGGTGATTTTGATGATGATGAAGGAGGTGGCATGTCCTTGAATGCATGTTCTCGAGCAATGCTCATGCAGAAGTTGGATCGTAGTGGTACTGCATCAAGCATGGTTGGTTCCCTCGGTAATTCTGTTGTCAACAACACAGGTCTTAATCTACCAGCGACAGGAAACATACTCGCAGCTGCGCCTGTTGGTGAATTGGCAGGTGGAGGTCTCCAAATACCCACGGCTACAATTCCTTCTATTGATACAATCGGTGTTGCAAGTGAATGCTTAATGTTAAAGAATATGTTTGATCCCAAAGATGAGATTGAACCAGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGCTTGGAACGTTAAAACACATATATGTTGACAAGAAGAGTGCTGGTTTTGTCTACTTACGATTTGAAGATACCCAATCTGCAATAAGTGCACAGCAGGCCTTGCACGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTCATGGTGCCTCAATCATATGAGGATAAATTCCCAGACAGCAGATAA 3171 0.4213 MAFWHRIRNPNLKTLCIQFQRCYIHLPHASTPKPFPVDIPHQNSVFHGRPTSVFNTVRFFAAPLQYQVKHKNEEDSGDLRLNEKIKAPYVRLVVDDGHHSIVPRFEALERAKTLKLDLVEVDKNAKPPVCKIMDFHKQMYKRQEREKERAKSKAEMTLRKDVKEVRFSEKTEAKDLKNKADMIKKLMEKGYRVKCKVSGKEDQDLTVLFSPILALMEDVCIVESGPHMGKKDAFMIVRHIKYGLSKKGGKKLQNATNDNSQEGDMEKSTANSSDSIEYESHAESGFETEEEVLSDGDKLSKSSLSVFSNNVNMTGSHNNQTNAAPEASPVSENRYRRTNHHGENNVQSNAHVPPAVTENRYKRVEPRGRFQQTSNNAGMNYQGPGTRDAFRSPLPNWNQTRHAPVNANVNPRIENNRQAFTLPGSRHSMPSHENIRSPPPNAPNTPRPGLRSRRVTMDFDEYEYLEKAVENPEVNHRANGGDKNVKSEERGRNGSSKHKDDDDDDVVDLHPRHSKSGDNSRDRERQRERGSTLHGSKSRDGDKDRNSGGSRDRRRDRDRDHENKDRKRDKERDHGDKDMKRDRERDRDRNRDQERDRRDRGSEAEQEQRSRSRSDRLRTDLDDKDREASRDREYRDRERSRDKDYKDRERVRESREHDRENRRHKEKKEETTEPADPERDQRAVFAYQISLKADERDVFEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVANGLTGLIGPYSGGARKLYVGNLHISITEADIRRVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAVTDQSGMQEFGGNTGDFDDDEGGGMSLNACSRAMLMQKLDRSGTASSMVGSLGNSVVNNTGLNLPATGNILAAAPVGELAGGGLQIPTATIPSIDTIGVASECLMLKNMFDPKDEIEPDFDLDIKEDVEAECSKLGTLKHIYVDKKSAGFVYLRFEDTQSAISAQQALHGRWFAGKMITASFMVPQSYEDKFPDSR 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01040 1056 MobiDBLite consensus disorder prediction 250 279 - -
Gma20g01040 1056 Gene3D - 613 767 IPR012677 -
Gma20g01040 1056 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 161 241 IPR036788 GO:0006413
Gma20g01040 1056 MobiDBLite consensus disorder prediction 280 297 - -
Gma20g01040 1056 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 877 980 IPR029123 -
Gma20g01040 1056 MobiDBLite consensus disorder prediction 310 331 - -
Gma20g01040 1056 MobiDBLite consensus disorder prediction 310 328 - -
Gma20g01040 1056 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 682 759 IPR000504 GO:0003723
Gma20g01040 1056 TIGRFAM infC: translation initiation factor IF-3 81 237 IPR001288 GO:0003743|GO:0006413
Gma20g01040 1056 MobiDBLite consensus disorder prediction 421 435 - -
Gma20g01040 1056 CDD RRM1_RBM39_like 684 755 - -
Gma20g01040 1056 Gene3D - 958 1056 IPR012677 -
Gma20g01040 1056 MobiDBLite consensus disorder prediction 247 297 - -
Gma20g01040 1056 SUPERFAMILY RNA-binding domain, RBD 786 1049 IPR035979 GO:0003676
Gma20g01040 1056 PANTHER CC1-LIKE SPLICING FACTOR 457 1052 - -
Gma20g01040 1056 Coils Coil 133 160 - -
Gma20g01040 1056 Pfam Translation initiation factor IF-3, N-terminal domain 81 148 IPR019814 GO:0003743|GO:0006413
Gma20g01040 1056 CDD RRM3_RBM39_like 961 1043 - -
Gma20g01040 1056 SMART rrm1_1 683 755 IPR000504 GO:0003723
Gma20g01040 1056 SMART rrm1_1 787 859 IPR000504 GO:0003723
Gma20g01040 1056 SMART rrm1_1 963 1041 IPR000504 GO:0003723
Gma20g01040 1056 MobiDBLite consensus disorder prediction 421 452 - -
Gma20g01040 1056 Gene3D - 782 889 IPR012677 -
Gma20g01040 1056 TIGRFAM SF-CC1: splicing factor, CC1-like family 576 1054 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gma20g01040 1056 Gene3D - 158 244 IPR036788 GO:0006413
Gma20g01040 1056 SUPERFAMILY RNA-binding domain, RBD 674 774 IPR035979 GO:0003676
Gma20g01040 1056 MobiDBLite consensus disorder prediction 466 680 - -
Gma20g01040 1056 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 786 863 IPR000504 GO:0003723
Gma20g01040 1056 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 962 1045 IPR000504 GO:0003723
Gma20g01040 1056 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 79 151 IPR036787 GO:0003743|GO:0006413
Gma20g01040 1056 MobiDBLite consensus disorder prediction 466 681 - -
Gma20g01040 1056 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 457 1052 - -
Gma20g01040 1056 Gene3D - 72 148 IPR036787 GO:0003743|GO:0006413
Gma20g01040 1056 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 692 751 IPR000504 GO:0003723
Gma20g01040 1056 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 986 1038 IPR000504 GO:0003723
Gma20g01040 1056 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 788 857 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01040 Gma-Chr20 37042389 37060982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01040 683 849 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 8.64e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01040 K13091 - gmx:100795336 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02646 10 53804759 53813423 Gma20g01040 20 37042389 37060982 GST