Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01020 ATGCTGACGGAGGGAAACAACAGCAGCTGCGGCAGCGGCAGCGGAGTGCAGCACCATACGACGTCGTCCTCGTCCTCGCCGGCGCAGAGCCGGCTACAGCGGCAGAAGCTGGAAGTATACAATGAGATTCTTCGCCGCTTGAAAGATTCCGGCAACGAAGAAGCCATGCAACCTGGCTTCCACGATCAGCTTTGGGCTCACTTTAATCGACTCCCTACGTGGTATGCGCTGGATGTGAATGTGGAAAGAGCCGCAGATGTTCTTATGCACAAGAGATTGCTGCATTTGGCGCATGATCCTGCTAATAGGCCTTCAATTGAAGTTCGATTAGTTCAGGTTCATCCCACATCCAATGGAAACTCAGCTGACACTTTTGAATCAGATGATCCTGGGATAGAATCTGGACAAAGTTCTTCAAAGTACTCAAGCAGACAGAGTATACATCCACCTCCTGCATTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGCAAATAATTCTGAAGACATAGAAGAGGAACAATCTGCACATGCCAATGTTCAATATTCACGGCATATGCATGAAATCACCATCTCAACAGATGACAAGCCCAAGCTTCTCAGTCAGTTAACTGCTTTGCTTTCTGAGATTGGACTGAACATCCAAGAAGCACATGCCTTTTCTACAACTGATGGTTTCTCATTAGATGTGTTTGTTGTTGAAGGATGGCCCCATGAGGAAACCGAAAAGCTTAAAGCTGCTTTGGAAAGAGGAGTCTTGAAGAAGATTGAGAGGCAGGTGAAGTCTAGTCCACAATCCGTATCTTCTGTTGACAAGCCCGATCAAGCAAAGATGAAAAGCGAACTGGATTATTTGACAATACCAACTGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGGGTCATATGGTGAACTATTTAAAGGTGTATATTGTAGCCAGGAAGTGGCCATCAAAGTTCTCAAGGCTGACCATGTAAACTCAGAATTGCAGAGAGAGTTCGCACAGGAAGTCTATATCATGAGAAAGGTTCGACACAAGAATGTTGTACAATTCATAGGAGCATGTACCAAGCCCCCAGGCTTATGCATAGTAACAGAATTTATGTCTGGTGGAAGTGTGTACGACTACCTACATAAGCAGAAGGGCTTTTTTAAATTTCCTACCCTTCTCAAAGTAGCAATTGATGTTTCTAAAGGAATGAACTACTTGCACCAACATAATATAATCCATAGAGACTTGAAGGCTGCCAACCTTTTGATGGATGAAAATTGTactgtaaaggtcgctgattttggggttgctagagttaaagctcaatctggtgtcatgactgcagaaactggaacatatcgatggatggctcctgagGTTATAGAACACAAGCCGTATGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTCACCGGAAAGCTTCCATACGAATATTTAACCCCCCTACAGGCAGCTATAGGAGTGGTTCAAAAGGGTTTACGACCCACCATCCCCAAGAACACTCATCCGAAGTATGTTGAGCTTCTTGAGAGGTCTTGGCAGCAAGATCCAACATTGAGGCCCGATTTCTCCGAAATTATCGAGATCCTGCAGCAGTTAGCAAAGGAGGTTGGAGATGGAGAGGAGCGACACAAGGATAAATATGGAGGACTTCTGTCTGTCCTTAGACGAGGACATCACTAA 1752 0.4184 MLTEGNNSSCGSGSGVQHHTTSSSSSPAQSRLQRQKLEVYNEILRRLKDSGNEEAMQPGFHDQLWAHFNRLPTWYALDVNVERAADVLMHKRLLHLAHDPANRPSIEVRLVQVHPTSNGNSADTFESDDPGIESGQSSSKYSSRQSIHPPPAFGSSPNLEALALEANNSEDIEEEQSAHANVQYSRHMHEITISTDDKPKLLSQLTALLSEIGLNIQEAHAFSTTDGFSLDVFVVEGWPHEETEKLKAALERGVLKKIERQVKSSPQSVSSVDKPDQAKMKSELDYLTIPTDGTDVWEIDPKHLKYGTQIASGSYGELFKGVYCSQEVAIKVLKADHVNSELQREFAQEVYIMRKVRHKNVVQFIGACTKPPGLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDVSKGMNYLHQHNIIHRDLKAANLLMDENCTVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPKYVELLERSWQQDPTLRPDFSEIIEILQQLAKEVGDGEERHKDKYGGLLSVLRRGHH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01020 583 PRINTS Tyrosine kinase catalytic domain signature 378 391 IPR001245 GO:0004672|GO:0006468
Gma20g01020 583 PRINTS Tyrosine kinase catalytic domain signature 415 433 IPR001245 GO:0004672|GO:0006468
Gma20g01020 583 PRINTS Tyrosine kinase catalytic domain signature 461 471 IPR001245 GO:0004672|GO:0006468
Gma20g01020 583 PRINTS Tyrosine kinase catalytic domain signature 480 502 IPR001245 GO:0004672|GO:0006468
Gma20g01020 583 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Gma20g01020 583 Pfam Protein tyrosine and serine/threonine kinase 304 553 IPR001245 GO:0004672|GO:0006468
Gma20g01020 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 20 565 - -
Gma20g01020 583 ProSiteProfiles ACT domain profile. 190 271 IPR002912 -
Gma20g01020 583 CDD ACT_TyrKc 188 255 - -
Gma20g01020 583 SUPERFAMILY Protein kinase-like (PK-like) 284 553 IPR011009 -
Gma20g01020 583 Gene3D - 186 261 - -
Gma20g01020 583 Gene3D Phosphorylase Kinase; domain 1 294 382 - -
Gma20g01020 583 Gene3D Transferase(Phosphotransferase) domain 1 383 572 - -
Gma20g01020 583 MobiDBLite consensus disorder prediction 1 33 - -
Gma20g01020 583 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma20g01020 583 SUPERFAMILY ACT-like 186 252 IPR045865 -
Gma20g01020 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Gma20g01020 583 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 20 565 - -
Gma20g01020 583 CDD STKc_MAP3K-like 310 553 - -
Gma20g01020 583 MobiDBLite consensus disorder prediction 117 152 - -
Gma20g01020 583 MobiDBLite consensus disorder prediction 117 157 - -
Gma20g01020 583 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01020 Gma-Chr20 36835711 36847454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01020 2 582 MAP Kinase Kinase Kinase AT4G35780 64.888 0.0 745
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma20g01020 PK_Tyr_Ser-Thr 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01020 - - gmx:100804170 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02663 10 53957142 53966705 Gma20g01020 20 36835711 36847454 GST