Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01017 ATGGCGCCCGGAAGGAAGAAGCGGCAAGGGAACACATCCATTATTCCTGTGGATGCAAACCCCACTCAGCAAAAAGCACAATCTTTGGATATTGATGCTGAGTGTGAGAGTGAGACCAAAAGAATGAAATTTGCTGAGGAAGATGGTGATGGGGCAGGGGGTTCTTCTTCTGTTGTGAAaaagaagcgtggcagaaaaagtaaaaaggagaagcaggacacggaaaagatgttagagagcaatttgtcggagaagaaagatactcaaggcgaataccacggtgaaaattgtggagtaggagggtcttcttctgttcaagaaagtgcgaaaaagaaacgtggaagaaagagtaaaaaggagaaggaggacatggaaaagaagaagatggcagaggagaaagatgctcaaaacgaaaaccatggtgaaaatggtggagtaggaggttcttcttgtgttgtagatggtgtgccaaagaagcgtggcagaaaaagtaagaaggagaaggaagacatggaaaaaaagatgttagaggagaaagatgctcaaaacgaaaaccacggtgaaaatggtggagtaggaggttcttcttctgttAAAGATGTTCAAGACGTTAACCATGCCGAAAATGGTGGGGTACCTGATATGAGGCGTGGAAGTAAAAGAAAGATGCTTAAGGAAGATGATGGTGAGTTTGAAATGCCTGTGGATTCTTCAGGAAGTAGCATTCAGAAACAATATAGTCTTAGGGCCCCTAGAGTCAATATAGAAGAGGCAATGCCAAAAATCAACAAGAGAGATCCTAAGCAGTGGATTGAAGAGGAGTCCTTAATGTGTCATCAATGTCAGAGAAATGATAAAGGCAGGGTTGTGAGGTGCACACGTTGTAAGAGGAAAAGATTTTGTGTACACTGTATAGAAAATTGGTATCCTCATTTGAAAGAGGATTATATTGCTGAGGCATGCCCTGTGTGCCGTGGTAATTGCAACTGCAAAGCATGCTTGAGATCCAATCAACTTATTAAAAAAATGAAGAAAAAAGAAGAAACCAATGAAAATGAGAAGATTGAACTCTCTATGCATTTGTTGCAAGTACTTCTTCCGTATTTAAGGCTGTTGGATGAAGAACAGATGATTGAGAATGAGACAGAAGCCAAGATACGGGGGCTCTCAGTCTCAGAGCTAAATGTAGCACAGGCAAATTTTGATAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTACAAAATGCTCTTTCGACCTTTGTCTCATCTGTTGTCGCGAGCTTCGAACTGGCCAGCTTGTAGGTGGTGCAGATCCAATTATGTTGGAGTTTGTCTGTCAAGGTCGTGATTACCTGCATGGTGAGGAAAATATAAGTGTAAaacaaaatgaaccaaatgctgttgaacaaaatgaaccaaatgctgttgCTGAGACTGTAGTTCGTGAGTGGTCAAGATCTGGGTGGCATGCAGAAAGTAATGGTAGCattccttgtccaaaagtcaatgatgaatgtaaccatggttttcttgaactgagaagcatattaggtcaacattttatcactgatttagtgcataaagcaaacgaactagcacaagcatacaagcttcaagatgtagttaagacccctgacaacttctgttcgtgtttgaggcttgatagaaacacagatgttagatataataatatgaggaaggttgcttctcgtgcagattccagggacaactatttatactgtcctagggctgtagatctacaggatgaggatttaaggcattttcagtggcattgggaaaagggggagcctgtcattgtcagcaacgtgcttgcaaaaacatctggtttaagctgggaaccacttgtcatgtggcgtgcattccgtcagatgactaagaccaagcatgaacaacatttggatgtgaaggcaattgattgcttagattggtgcgagggagaaattaatatccaccaattctttactgggtatacaaaagttcgtgaggattggcatagttggcctcaaatattgaaattaaaagattggcctccttctaatttatttgaggaacgcttgcctcgacattgtgcagagttcatatcttccttgcccttcaaggaatatactgatcctctcaaaggttctcttaacttagctgtgaagttgccaacagattgtctaaaaccagacatggggccaaagacgtatattgcttacggatttcatcaggagctcgggcgtggtgattcagtgactaagctccattgtgatatgtctgatgcagtaaatgtgttgactcatattgctgaagtgaaattggaaccaaagcatctcattgccattgagaagttgaaacaaaagcactttgaacaagacaaaagggagctacttggtgatgatcaaaatagagaaactagtgttgacatgcttaataatttgtcttctactataaatgctttggacaagcaaaatagtgtccaagtcatggaacacaaaggcaaattatatgataggaaagaagttgatcagttccatcaaccctctggtggtaatgagattgccattgctaatgaggatggtctttcatgtgaatcagagcttaaagaggttgacaaagtaaaaataaagcaagaaagtgatatgttgtctgggggggatggttcagaaggtgctctctgggatatttttcggaggcaggatgtacctaaattgcaggaatatcagaggaagcatttcagagagttcaggcatctccattgctgtcctttaaagcagGTTATTCACCCCATCCATGACCAGACCTTCTATCTGACTGTGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGGTAGGAGATGCTGTTTTTGTTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATTAAGGTTGCATTGGATTTTGTCTCTCCGGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAGGAATTTCGCACACTTCCAATAAACCACATGTCTTGTGAGGACAAATTGGAGGTGAAGAAGATGACAATATATGCTATGCAAGACGTGATTGAAAAATTGGAGGAAGCAAGGTCCGGGAAAACCAAGGTTTCAGAGTAA 3174 0.1897 MAPGRKKRQGNTSIIPVDANPTQQKAQSLDIDAECESETKRMKFAEEDGDGAGGSSSVVKKKRGRKSKKEKQDTEKMLESNLSEKKDTQGEYHGENCGVGGSSSVQESAKKKRGRKSKKEKEDMEKKKMAEEKDAQNENHGENGGVGGSSCVVDGVPKKRGRKSKKEKEDMEKKMLEEKDAQNENHGENGGVGGSSSVKDVQDVNHAENGGVPDMRRGSKRKMLKEDDGEFEMPVDSSGSSIQKQYSLRAPRVNIEEAMPKINKRDPKQWIEEESLMCHQCQRNDKGRVVRCTRCKRKRFCVHCIENWYPHLKEDYIAEACPVCRGNCNCKACLRSNQLIKKMKKKEETNENEKIELSMHLLQVLLPYLRLLDEEQMIENETEAKIRGLSVSELNVAQANFDKDERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRTGQLVGGADPIMLEFVCQGRDYLHGEENISVKQNEPNAVEQNEPNAVAETVVREWSRSGWHAESNGSIPCPKVNDECNHGFLELRSILGQHFITDLVHKANELAQAYKLQDVVKTPDNFCSCLRLDRNTDVRYNNMRKVASRADSRDNYLYCPRAVDLQDEDLRHFQWHWEKGEPVIVSNVLAKTSGLSWEPLVMWRAFRQMTKTKHEQHLDVKAIDCLDWCEGEINIHQFFTGYTKVREDWHSWPQILKLKDWPPSNLFEERLPRHCAEFISSLPFKEYTDPLKGSLNLAVKLPTDCLKPDMGPKTYIAYGFHQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLEPKHLIAIEKLKQKHFEQDKRELLGDDQNRETSVDMLNNLSSTINALDKQNSVQVMEHKGKLYDRKEVDQFHQPSGGNEIAIANEDGLSCESELKEVDKVKIKQESDMLSGGDGSEGALWDIFRRQDVPKLQEYQRKHFREFRHLHCCPLKQVIHPIHDQTFYLTVEHKRKLKEEYGIEPWTFIQKVGDAVFVPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHMSCEDKLEVKKMTIYAMQDVIEKLEEARSGKTKVSE 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01017 1057 SMART cupin_9 703 1015 IPR003347 -
Gma20g01017 1057 ProSiteProfiles JmjC domain profile. 722 1015 IPR003347 -
Gma20g01017 1057 MobiDBLite consensus disorder prediction 68 92 - -
Gma20g01017 1057 Coils Coil 164 185 - -
Gma20g01017 1057 MobiDBLite consensus disorder prediction 156 185 - -
Gma20g01017 1057 Coils Coil 119 139 - -
Gma20g01017 1057 MobiDBLite consensus disorder prediction 13 30 - -
Gma20g01017 1057 SUPERFAMILY Clavaminate synthase-like 600 1035 - -
Gma20g01017 1057 PANTHER - 61 1043 - -
Gma20g01017 1057 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 273 340 IPR018866 -
Gma20g01017 1057 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 61 1043 IPR045109 GO:0032454|GO:0033169
Gma20g01017 1057 MobiDBLite consensus disorder prediction 118 139 - -
Gma20g01017 1057 Gene3D Cupin 592 1024 - -
Gma20g01017 1057 Coils Coil 336 356 - -
Gma20g01017 1057 MobiDBLite consensus disorder prediction 1 199 - -
Gma20g01017 1057 Pfam JmjC domain, hydroxylase 901 998 IPR003347 -
Gma20g01017 1057 MobiDBLite consensus disorder prediction 31 48 - -
Gma20g01017 1057 ProSiteProfiles Zinc finger RING-type profile. 278 325 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01017 Gma-Chr20 36772117 36792203 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma20g01017 JmjC 1.2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01017 K15601 - gmx:112997634 1808.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02664 10 53987024 53996053 Gma20g01017 20 36772117 36792203 GST