Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01008 ATGTCTTCCGGCGGCGGCGGAGGCGGAGCAAAGCCGTTCTTCTGCCACGTGTGCAGTCAGAGGATCACGTGCTCCGATGAGTCGGAACCCTTCTGCCCGATCTGTATGGAAAGTTTCGTAGAAGAATGCAACCCTAACAACCCTAACCCTAATCTTTTCACCGAGAATGAGGAATCTTCTGATTCCGAAATCTCCTTCTCCCTGCTCCCTCTCTTTCTCTCCTCCGTATCCAGGTCCCGACCCGAACCCGACATGTTCGACCCGATGGTTTTCCTCCAAAACCACATTCAGGGCCTTCGCGCCGACGGCGCCAACATCCAAGTTGACTTTGGCCACCCTTCCGAGCAGCAAGGGTTTCGCCTCCCTGCGAACATCGGCGACTACTTCATGGGCCCCGGCCTTGAGCAGTTCATTCAGCAGCTCGCCGACAATGATCCCAACCGCTACGGCACGCCTCCTGCCGCCAAGGACGCCGTCGAGAATCTCCCCACCATCACCGTCGACGACGAGTTGTTGAACTCCGAGCTGAACCAGTGCGCGGTCTGCCAGGACGAGTTCGAGAAGGGCTCTCTGGTGACGCAGATGCCCTGCAAGCACGCGTACCACGGCGACTGCTTGATTCCGTGGCTTCGACTGCATAACTCATGTCCTGTGTGCCGGTATGAATTGCCCACCGACGACGCGGATTACGAGAATGAGGTTCGCGGGAATGGCGGTGACGGCGGGTCGAGGACTGGTGGGAGCGGCGACGGTGGTGGTGGAAGCGGCGGTGGAGGCGGAGGGGGGAGTAATAGACCTGTTCGCAGGACTGTTAGAATATATTTGCGGCATCCTGATGCTGCTGACTCCGCGCAGGACAGTGCTGAAAGGGGATGGGAGTGGGGAAGTTGGGATTGA 897 0.5853 MSSGGGGGGAKPFFCHVCSQRITCSDESEPFCPICMESFVEECNPNNPNPNLFTENEESSDSEISFSLLPLFLSSVSRSRPEPDMFDPMVFLQNHIQGLRADGANIQVDFGHPSEQQGFRLPANIGDYFMGPGLEQFIQQLADNDPNRYGTPPAAKDAVENLPTITVDDELLNSELNQCAVCQDEFEKGSLVTQMPCKHAYHGDCLIPWLRLHNSCPVCRYELPTDDADYENEVRGNGGDGGSRTGGSGDGGGGSGGGGGGGSNRPVRRTVRIYLRHPDAADSAQDSAERGWEWGSWD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01008 298 SUPERFAMILY RING/U-box 158 226 - -
Gma20g01008 298 MobiDBLite consensus disorder prediction 230 298 - -
Gma20g01008 298 SMART ring_2 179 219 IPR001841 -
Gma20g01008 298 Pfam Zinc finger, C3HC4 type (RING finger) 178 219 - -
Gma20g01008 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 226 IPR013083 -
Gma20g01008 298 PANTHER OS06G0101300 PROTEIN 8 282 - -
Gma20g01008 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 282 - -
Gma20g01008 298 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01008 Gma-Chr20 36714809 36717477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01008 123 231 C3H Transcription Factor Family AT5G01980 47.706 7.66e-32 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02674 10 54032387 54035013 Gma20g01008 20 36714809 36717477 GST