Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01006 ATGTCGAACTCCGACGGCACCACTAACGGCGCAATCACTGAGGCGCAGAGACAGCAGCAACAGCAAGGGGGGAAGGCGTTAGCCGTTAAGAAGCCGCCGTCAAAGGACCGTCACAGCAAGGTGGACGGTCGCGGGCGCCGCATAAGGATGCCAATCATATGCGCCGCACGTGTGTTCCAGCTCACGCGCGAGCTTGGCCACAAGTCCGACGGTCAAACCATCGAGTGGCTCCTCCGTCAGGCCGAGCCCTCCGTCATCGCCGCCACCGGCACCGGCACCATCCCCGCCAGCTTCTCCTCCGTCTCCCTCTCCTCCCCTTCCTCCACCTCCGACTACAAGCCCCAGTTACTCGCTCCCACTCCCTTCATCCTCGGCAAGCGCATACGCACCGACGAAGACTCTTCCAAAGACGAAGCTGTTTCCGTGGGCCCCTCTCTCGTGGGGCCGTATGCCCCTCCCGGACCAGGGGTCGTCCCGGCCTGGCCCGATTTCGGACAAATTTGGAGTTTTGTCGCCGCCGCTGCTGCTCCCGAAATGGTGTCGGTGCCGCAGCAGCAGCAGCAGCAGGCTTCGTTGTTCGCTCATCACCACCGTCAGCAGCAGCAGCTGGCCATCGGAGAAGCTTTGGCGGCGAGGGTGGGAAATTACCTTCCGGGACATCTGAATTTGCTCGCTTCATTGTCAGGTGGACCTGGGAATTCTGGTCGGAGAGACGATGAGCCTCGTTGA 729 0.62 MSNSDGTTNGAITEAQRQQQQQGGKALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSVIAATGTGTIPASFSSVSLSSPSSTSDYKPQLLAPTPFILGKRIRTDEDSSKDEAVSVGPSLVGPYAPPGPGVVPAWPDFGQIWSFVAAAAAPEMVSVPQQQQQQASLFAHHHRQQQQLAIGEALAARVGNYLPGHLNLLASLSGGPGNSGRRDDEPR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01006 242 Pfam TCP family transcription factor 34 136 IPR017887 -
Gma20g01006 242 MobiDBLite consensus disorder prediction 1 46 - -
Gma20g01006 242 MobiDBLite consensus disorder prediction 30 46 - -
Gma20g01006 242 ProSiteProfiles TCP domain profile. 34 88 IPR017887 -
Gma20g01006 242 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 239 - -
Gma20g01006 242 MobiDBLite consensus disorder prediction 1 25 - -
Gma20g01006 242 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 239 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01006 Gma-Chr20 36692351 36694249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01006 7 242 TCP Transcription Factor Family AT5G23280 62.140 4.56e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma20g01006 TCP 7.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01006 K16221 - gmx:100800443 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02679 10 54060299 54061039 Gma20g01006 20 36692351 36694249 GST