Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01002 ATGTCTCAGACATCCACTGTCCTGCCTGCCTTCCACTCCATCAAATCATTGCCTCCTGAGTTCAACCCCGTTCTCGTGGAAAAACATGGAGATGTTAAATTTAGACACACCAATCCGATTGGATCAAATGGCCTTGAAAATGGTGCACTGGTAGCGGAGATTTCTAAGGAAGTTAACTGCCGTGCTGGTGGCATGGATCTTTTTGACGAGGACTCGCCGTATGGTGGAAAAGGTAGATCATTAAAAGACCGGCCGTCTAATGCAGATGAAGACTCAGTATCTGTTTCATTGCCCCTCCCATCGATTTTGACATCCTCTAGGGAAAGCAGGTGGAATGATGCAAATCCTTATGGTTCAAAAAAGAAGCTTCAGTCCTGGCTTCAGCTACCGAATGGGGATTGGGAGCTGGTAAAGATAATAACAACTTCTGGAGCTGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAAGGTGAAAGAGGAGAGTTTGGTGCCAGCTAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATACAAAAGCTGGGCCTGTTTTGGTTGCTGTAAATCCATTTAAGAAAGTTCCTCTGTATGGTAATGACTACATTGAAGCCTACAAGTGTAAATCAATTGAAAGCCCTCATGTATATGCAATTACTGACACAGCCATCCAAGAAATGATACGGGATGAAGTGAATCAATCTATAATTATAAGTGGTGAGAGTGGAGCAGGGAAGACTGAGACGGCAAAAATAGCAATGCAGTACTTGGCTACCCTTGGTGGTGGAAGTGGAATAGAGAATGAGATATTAAAGACTAATCCGATACTAGAAGCCTTTGGTAATGGAAAAACATTAAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACATGTAAGTTTTCACAGGATTCTAGAGTAGTCCAATGCAACGAAGGGGAAAGGTCATATCATATATTTTATCAGCTATGTGCTGGAGCACCATCATCACTTAGGGAAAAGCTAAATCTAACAAGTGCTGAGGACTATAAATATCTGAGGCAGAGCAATTGTTATTCAATTACGGGAGTTGATGACGCAGAAGAATTTCGCATAGTCAAGGAAGCTCTGGATGTTGTCCACATTAGCAAAGGAGACCAGGAGAATGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGGTAGATAATGAAAATCATGTTCAAGCTGTTGAGGATGAAGGACTGTTCACTGTTGCCAAGTTAATTGGCTGTGAAATTGAAGACCTGAAGTTGACTTTATCAACTCGCAAAATGAAAGTTGGTAATGATATTATTGTCCAGAAGTTGACTCTATCTCAGGCTATTGATGCAAGAGATGCTTTGGCGAAGTCAATATATGCTTGTCTGTTTGATTGGTTGGTTGAACAAATAAACCAATCCCTTGCGGTTGGCAAAAGACGAACTGGCAGATCAATCAGCATCCTAGATATTTATGGCTTTGAGTCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAACAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATCCAAGATGGAATTGATTGGGCTAAAGTTGAATTTGAAGACAATCAAGATTGCCTTAATCTTTTTGAAAAGAAACCACTGGGGCTACTATCCCTGTTAGATGAAGAGTCAACTTTCCCTAATGGCACAGATTTAACCTTTGCTAACAAGCTTAAGCAGCATTTGAATTCCAACTCATGCTTCAAAGGAGAACGAGAAAAAGCCTTTACTGTGCGTCATTATGCAGGGGAGGTCACTTACGATACATCTGGATTCCTGGAAAAGAACAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCAAGCAAATGTCATCTTCCTAAGTTATTTGCATCCCATATGCTTACTCAATCTGAGAAGCCTGTAGTAGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGCGTTGCCACAAAATTCAAGGGACAATTGTTCCAATTGATGCAACGTTTAGAGAGTACTACACCACATTTTATCCGATGCATCAAGCCCAATAATCTCCAATCACCTGGATCATATGAGCAAAGCCTTGTACTGCAGCAGTTGAGATGTTGTGGGGTCCTGGAAGTGGTTCGGATATCAAGATCGGGCTTTCCTACTAGAGTATCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTCCTTGAAAATGTTGCCTCTCAGGATCCACTTAGTGTTTCAGTTGCTATTCTTCATCAATTCAACATTTTGCCTGAGATGTATCAAGTTGGCTACACGAAACTATTCTTTCGAACAGGGCAGATTGGAGTGCTTGAAGATACCAGAAATCGTACCCTGCATGGAGTTTTACGTGTGCAAAGTTGCTTCAGGGGTTACCGAGCTCGTTGTTATCGCAAGGAGCTTTGGAGAGGAATCACTACTCTCCAATCATTTATTAGAGGAGAGAAAAGCAGAAAGGAATATGCAGCTTTGCTTCAGAGACATAGGGCTGCTGTTATTATACAAAAGCGGATGAAAACAGTACTTGCAAGGAACAGAATGAAAAGTATTAATGGTGCTGCAGTTGTCATACAATCATTTATTCGTGGTTGGTTAGTCAGAAGATGCTCAGGAGATATAGGACTATCAAAACCTCGGGGCATTAAGACTAATGAGTCAGATGAGGTTCTGGTGAAGTCATCTTTCCTGGCTGAATTACAGCGCCGGGTACTTAAGGCAGAAGCTTCCCTGAGAGAGAAAGAAGAGGAAAATGACATTCTTCACCAACGCCTTCAACAGTATGAGAACAGATGGTCTGAATATGAATTAAAGATGAAATCCATGGAAGAAGTATGGCAGAAACAAATGAGGTCTCTACAGTCTAGCCTCTCTATTGCAAAGAAGAGCCTTGCTATGGATGATTCTGAAAGAAATTCAGATGCTTCTGTTAATGCAAGTGATGACAGGGATTTCAGCTGGGATGTAGGAACCAATCACCGGCGCCAAGAAAGCAATGGGGCAAGATCAATGAGTGCTGGTTTGAGTGTTATAAGTCGGTTGGCTGAAGAATTTGAGCAGAGGAGTCAAGTGTTTGGTGATGATGCAAAGTTCTTGGTAGAGGTAAAATCTGGTCAAGTTGAAGCAAGTTTGAACCCAGACAGAGAGCTTAGAAGGTTAAAACAAATGTTTGAGGCTTGGAAAAAGGATTATGGTGCAAGACTACGTGAAACAAAGGTCATTTTGCATAAACTTGGAAGTGAAGATGGATCAATTGAGAAAGTGAAGAAAAGTTGGTGGGGAAGAAGGAATAGTACAAGAATAAGTTGA 3516 0.4076 MSQTSTVLPAFHSIKSLPPEFNPVLVEKHGDVKFRHTNPIGSNGLENGALVAEISKEVNCRAGGMDLFDEDSPYGGKGRSLKDRPSNADEDSVSVSLPLPSILTSSRESRWNDANPYGSKKKLQSWLQLPNGDWELVKIITTSGAESVISLPDGKVLKVKEESLVPANPDILDGVDDLMQLSYLNEPSVLFNLQYRYNHNMIYTKAGPVLVAVNPFKKVPLYGNDYIEAYKCKSIESPHVYAITDTAIQEMIRDEVNQSIIISGESGAGKTETAKIAMQYLATLGGGSGIENEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCKFSQDSRVVQCNEGERSYHIFYQLCAGAPSSLREKLNLTSAEDYKYLRQSNCYSITGVDDAEEFRIVKEALDVVHISKGDQENVFAMLAAVLWLGNISFTVVDNENHVQAVEDEGLFTVAKLIGCEIEDLKLTLSTRKMKVGNDIIVQKLTLSQAIDARDALAKSIYACLFDWLVEQINQSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNSCFKGEREKAFTVRHYAGEVTYDTSGFLEKNRDLLHLDSIQLLSSSKCHLPKLFASHMLTQSEKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQSLVLQQLRCCGVLEVVRISRSGFPTRVSHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGVLRVQSCFRGYRARCYRKELWRGITTLQSFIRGEKSRKEYAALLQRHRAAVIIQKRMKTVLARNRMKSINGAAVVIQSFIRGWLVRRCSGDIGLSKPRGIKTNESDEVLVKSSFLAELQRRVLKAEASLREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASDDRDFSWDVGTNHRRQESNGARSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLNPDRELRRLKQMFEAWKKDYGARLRETKVILHKLGSEDGSIEKVKKSWWGRRNSTRIS 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01002 1171 PRINTS Myosin heavy chain signature 257 282 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 PRINTS Myosin heavy chain signature 299 326 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 PRINTS Myosin heavy chain signature 203 222 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 PRINTS Myosin heavy chain signature 532 560 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 PRINTS Myosin heavy chain signature 585 613 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1170 - -
Gma20g01002 1171 SMART MYSc_2a 167 847 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 ProSiteProfiles Myosin motor domain profile. 173 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 CDD MYSc_Myo8 187 834 IPR036022 -
Gma20g01002 1171 Pfam Myosin head (motor domain) 175 834 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 120 169 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gma20g01002 1171 MobiDBLite consensus disorder prediction 72 89 - -
Gma20g01002 1171 Gene3D Kinesin motor domain 176 775 IPR036961 -
Gma20g01002 1171 MobiDBLite consensus disorder prediction 65 95 - -
Gma20g01002 1171 MobiDBLite consensus disorder prediction 1033 1047 - -
Gma20g01002 1171 Gene3D - 899 940 - -
Gma20g01002 1171 Gene3D - 850 898 - -
Gma20g01002 1171 ProSiteProfiles IQ motif profile. 920 949 IPR000048 GO:0005515
Gma20g01002 1171 Coils Coil 966 1014 - -
Gma20g01002 1171 ProSiteProfiles IQ motif profile. 873 900 IPR000048 GO:0005515
Gma20g01002 1171 SMART iq_5 896 918 IPR000048 GO:0005515
Gma20g01002 1171 SMART iq_5 847 869 IPR000048 GO:0005515
Gma20g01002 1171 SMART iq_5 919 941 IPR000048 GO:0005515
Gma20g01002 1171 SMART iq_5 870 892 IPR000048 GO:0005515
Gma20g01002 1171 Gene3D - 779 847 - -
Gma20g01002 1171 ProSiteProfiles IQ motif profile. 850 877 IPR000048 GO:0005515
Gma20g01002 1171 Gene3D - 356 415 - -
Gma20g01002 1171 Pfam IQ calmodulin-binding motif 923 938 IPR000048 GO:0005515
Gma20g01002 1171 Pfam IQ calmodulin-binding motif 852 867 IPR000048 GO:0005515
Gma20g01002 1171 Pfam IQ calmodulin-binding motif 874 891 IPR000048 GO:0005515
Gma20g01002 1171 Pfam IQ calmodulin-binding motif 898 918 IPR000048 GO:0005515
Gma20g01002 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 894 IPR027417 -
Gma20g01002 1171 Gene3D - 542 736 - -
Gma20g01002 1171 MobiDBLite consensus disorder prediction 1033 1070 - -
Gma20g01002 1171 PANTHER MYOSIN 9 1170 - -
Gma20g01002 1171 Gene3D Myosin VI head, motor domain, U50 subdomain 417 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01002 Gma-Chr20 36655103 36667102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01002 7 1169 Myosins gene family AT1G50360 75.641 0.0 1780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01002 - K10357 gmx:100782618 2295.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02683 10 54083428 54098035 Gma20g01002 20 36655103 36667102 GST