Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00982 ATGCGTTGGCTCAGCATTTTAATGGTTCTGTTTCTTGGTTCGTCAGATGATGACTTGGAGGAGATAGAAGATCCAAGGAGGACTCTTCCGCAATGGGCTACTAATACAGAGAAGAGTTCATATAATGGTGGATGGTCTAGGCGGGATAGTTCTTCAAGAGGGGCAAATAGTTCAAACCCAAGCTCTTCTAATGTTTATAATCATTCACAAGTTAAGCCTCAAACCCTGCCCGTGTCCAGCACCAATACACTGAACCATAGAATTGCACGAAGAGATGAACCTTCCTACCATGCCCTGAATGGAAACACAAGTCAGCAACAGACCGTTAGTTCCCGAATTTCAAATATTCATGGTGCAGATTATGAGAAAATGTCATCTCAGCAAGCTTTCAAGAGGACCCTTCCGTCATCTCTTCAACCTTCTGCAACAAGGGCTCTTCCTTCTTCATTTGCATCAGACAGCAGATTAAGAAACTTAAAAGATAACGCGAGCAGTAGTCAACTTCATGATGCATATAAGAATCGTCCCCATGGAGTAGGACCTAGCACGTCCAGTGACAGGGGCTACATTCGTGAAAATTTTGGCAGGGGCTATGATGAAGATCGTTTCTTGTATCAAAATGGTGGGAATAGGATTCTTCCTTCACCTTTGATGCTCGGAAAGGTTATATCTCCACAGTTTGCTACTTCTAGTGAATCTGCGTATCGTTCTGGAGCAGGTGATGAAAGGGCTGCTGAAAGTGATGAGAGACTAATTTATGAGGCAGCATTGCAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGCAGGGCCTTGGAAAGACAATTTCGATGATTTCCCTCATCCTGGCACAGAGGACATTACAGTCAAAATCGAAAATAGATGATACATGCAGTCATAAAACTGAAGCTTTGAATTTGGACGATGATGATGACAATGGTAGTGTTGATGTGGAAAAGCATAAAAATAGCGAAGAATCTGATGATATAAAACCTAGTAGAGAACCAAGCAGTTCAACACAGGCACCTGGTAGAAAAAGGCCAGCTGCTGGTACACTAGTTGTCTGCCCTGCTAGTGTTCTTCGACAGTGGGCCAGGGAACTCGATGAAAAAGTTGGAGATGAAAAGCTTTCTGTTTTGGTTTATCATGGGGGCAGTAGGACAAAGGATCCTGTTGAGCTCGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCCAAACAACCATTAGTTGAGGAGGATGATATTGATGAAAAAATGGGGGAAAGATTTGGGTTATCCTCTGAGTTTTCTGTTAGTAAAAAGAGGAAAAAGCCATTTAATGGAAATAAGAAGAGTAAAAAAGGTGGAAAGGGAATTGACAGTTCTTCTATTGAATGTGGTTCTGGTCCTCTTGCCAAAGTTGGTTGGTTTAGGGTTATTCTTGATGAGGCTCAAACGATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCCAAAAGAAGGTGGTGCTTATCTGGAACTCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGGTTCCTAAAGTATGATCCTTATGCTGTATACAAATCATTCTACAATACAATAAAAGTTCCAATATCCAAAAATACTATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCCAAGACAATTGAGCTCAGTAAGGTGGATTTCTCGATTGAGGAGCGGGCATTCTACACCAAACTGGAATCAGATTCGCGTTCTCAATTTAAGGCATATGCTGCTGCTGGGACAGTGAGCCAAAACTATGCTAATATTCTTTTAATGCTTTTACGTCTCCGACAGGCTTGTGACCACCCGCTTCTTGTTAAAGATTTTGATTCTGATCCTGTTGGGAAGGATTCTGTCGAAATGGCAAAAAATCTTCCTAGGGAAATGCTGATTAATCTTTTTAATTGTTTGGAATCAACCTTTGCTATATGTCTTGTTTGCAACGATCCTCCTGAAGAGCCTGTTATTACGATGTGTGGTCATGTCTTCTGTTATCAATGTGTATCAGAATATTTGACTGGTGATGATAATACGTGCCCGTCAGTTAATTGTAAAGAACTAATTGGCGATGATCTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATCTCTGATGATGGTGGCAGTGTTAGTTTTGCAAATTCACATCTTTGTGATTATTCACTAGTGCAGCAGCGTGACTACACTTCATCTAAAATCAAAGCTGTTCTTGAGGTTCTGCAGTCAAATTGTAAATTGAAGATTTCTAGTTCTGACTTACCGAACTCCTCTGGAGGTTGTAGAGATTCACCTTCTTTGGATAATTTACATGTTGAAGACTGCGATTCAGATGTTAGGGTTACAAAACACACAAGAAGGTATTCAGAGTCCACAACTGAAGGACCAATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGCTGGACTTAGTTGAGACATCGTTGAAACAATTTGGTATACAGTACCGGAGACTTGATGGTAGAATGACTCTGGGTGCGAGGGACAAAGCTGTTAAGGATTTCAATACTGAACCTGAGATAACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCGACAACTGAAGATCAAGCTATTGATCGAGCTCACAGAATTGGGCAAACTCGTCCTGTTACTGTGACACGAATCACTATAAAAGATACAGTTGAAGATAGGATACTGGCTCTTCAGGACGACAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGCGCGTCTGGAACTCGCCTTACAGTAGATGATCTGAAGTATCTTTTCATGGTGTAG 3093 0.4103 MRWLSILMVLFLGSSDDDLEEIEDPRRTLPQWATNTEKSSYNGGWSRRDSSSRGANSSNPSSSNVYNHSQVKPQTLPVSSTNTLNHRIARRDEPSYHALNGNTSQQQTVSSRISNIHGADYEKMSSQQAFKRTLPSSLQPSATRALPSSFASDSRLRNLKDNASSSQLHDAYKNRPHGVGPSTSSDRGYIRENFGRGYDEDRFLYQNGGNRILPSPLMLGKVISPQFATSSESAYRSGAGDERAAESDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQQGLGKTISMISLILAQRTLQSKSKIDDTCSHKTEALNLDDDDDNGSVDVEKHKNSEESDDIKPSREPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGSRTKDPVELAKFDVVLTTYSIVTNEVPKQPLVEEDDIDEKMGERFGLSSEFSVSKKRKKPFNGNKKSKKGGKGIDSSSIECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISKNTIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLESDSRSQFKAYAAAGTVSQNYANILLMLLRLRQACDHPLLVKDFDSDPVGKDSVEMAKNLPREMLINLFNCLESTFAICLVCNDPPEEPVITMCGHVFCYQCVSEYLTGDDNTCPSVNCKELIGDDLVFSKATLRSCISDDGGSVSFANSHLCDYSLVQQRDYTSSKIKAVLEVLQSNCKLKISSSDLPNSSGGCRDSPSLDNLHVEDCDSDVRVTKHTRRYSESTTEGPIKAIVFSQWTSMLDLVETSLKQFGIQYRRLDGRMTLGARDKAVKDFNTEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQDDKRKMVASAFGEDHAGASGTRLTVDDLKYLFMV 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00982 1030 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 718 773 IPR013083 -
Gma20g00982 1030 ProSitePatterns Zinc finger RING-type signature. 739 748 IPR017907 -
Gma20g00982 1030 SMART ring_2 724 762 IPR001841 -
Gma20g00982 1030 MobiDBLite consensus disorder prediction 124 150 - -
Gma20g00982 1030 ProSiteProfiles Zinc finger RING-type profile. 724 760 IPR001841 -
Gma20g00982 1030 CDD DEXDc_SHPRH-like 278 608 - -
Gma20g00982 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 1029 IPR027417 -
Gma20g00982 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 608 IPR027417 -
Gma20g00982 1030 SUPERFAMILY RING/U-box 722 768 - -
Gma20g00982 1030 MobiDBLite consensus disorder prediction 343 372 - -
Gma20g00982 1030 Gene3D - 376 462 IPR038718 -
Gma20g00982 1030 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 859 1025 IPR001650 -
Gma20g00982 1030 Gene3D - 475 621 IPR038718 -
Gma20g00982 1030 Gene3D - 253 339 IPR038718 -
Gma20g00982 1030 Pfam SNF2-related domain 281 685 IPR000330 GO:0005524|GO:0140658
Gma20g00982 1030 MobiDBLite consensus disorder prediction 30 81 - -
Gma20g00982 1030 MobiDBLite consensus disorder prediction 164 192 - -
Gma20g00982 1030 MobiDBLite consensus disorder prediction 97 111 - -
Gma20g00982 1030 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 48 1029 - -
Gma20g00982 1030 Pfam Helicase conserved C-terminal domain 875 972 IPR001650 -
Gma20g00982 1030 CDD SF2_C_SNF 873 981 - -
Gma20g00982 1030 SMART ultradead3 274 587 IPR014001 -
Gma20g00982 1030 MobiDBLite consensus disorder prediction 92 111 - -
Gma20g00982 1030 MobiDBLite consensus disorder prediction 343 389 - -
Gma20g00982 1030 MobiDBLite consensus disorder prediction 480 500 - -
Gma20g00982 1030 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 570 IPR014001 -
Gma20g00982 1030 SMART helicmild6 889 972 IPR001650 -
Gma20g00982 1030 Gene3D - 623 1029 IPR027417 -
Gma20g00982 1030 Pfam Zinc finger, C3HC4 type (RING finger) 724 760 - -
Gma20g00982 1030 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 48 1029 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00982 Gma-Chr20 36481485 36492653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00982 14 930 RAD5 or RAD16-like Gene Family AT1G50410 55.867 0.0 914
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma20g00982 SNF2_N 4.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00982 - - gmx:100795142 1947.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02698 10 54211452 54223304 Gma20g00982 20 36481485 36492653 GST