Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00972 ATGAATTGCTTTGTGGTGTGTCAGTCTCGTTTGTGGGTAGTGACCATTGTGTTCTACACATGCATTTTGATCCCATTGATGAAACTAAAGAGGGCACTTGCAAGCATGTTTTTGTTCTCTTGTGAGACCAAAGGCATGGCCAAGGAGATGGAGTTCCCAGAAATTCCTTCCCTGCCCGTGGCAAGGTACGAGGATTTGAAGGGTCATAACTGTGATGGAGAGAAACAAGAGATTTGTTCCATTTGCTTGGTGGAGTATGAGGGGGAAGATGCAGTGAGCAAGCTGGGAAGGTGTGGGCACGTTTTCCATCTCAATTGCATTGACCAATGGATACTACGCAATCAATTCTCTTGCCCACTTTGTAGGTCCTTTTTGTTTTCTCATCATGCACATACCCAGAATTAG 405 0.4494 MNCFVVCQSRLWVVTIVFYTCILIPLMKLKRALASMFLFSCETKGMAKEMEFPEIPSLPVARYEDLKGHNCDGEKQEICSICLVEYEGEDAVSKLGRCGHVFHLNCIDQWILRNQFSCPLCRSFLFSHHAHTQN 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00972 134 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 126 - -
Gma20g00972 134 Pfam Ring finger domain 79 122 IPR001841 -
Gma20g00972 134 SUPERFAMILY RING/U-box 63 128 - -
Gma20g00972 134 SMART ring_2 79 121 IPR001841 -
Gma20g00972 134 ProSiteProfiles Zinc finger RING-type profile. 79 122 IPR001841 -
Gma20g00972 134 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 126 - -
Gma20g00972 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 130 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00972 Gma-Chr20 36384322 36384968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00972 8 134 C3H Transcription Factor Family AT4G38140 39.535 5.19e-25 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00972 - - pvu:PHAVU_007G012000g 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02706 10 54276837 54277323 Gma20g00972 20 36384322 36384968 GST