Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00966 ATGGTGAACGTGGTGGAATTGCAGAAACAGTTGCAGAGGTGGCAGCAGAGTGGGAATGTGAATGTGAATGTGAATGTTGATGCCAACGGAGAACTCATGTATGTCAAGGTCATGACTGATGAACAGTTGGAAACTCTGAGGAAGCAAATAGCCGTTTATGGCACCATTTGTGAGCAACTTATTGAGATGCACAGAACACTCTCAGCTCAACAGGATCTTGCAGGGGTTAGGTTAGGAAACATATACTGTGACCAATTGATGACATCTGGTGGGCACAAAATAACCTCAAGACAAAGGTGGACACCTACACCTGTGCAGCTACAAATTCTTGAACGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGGAAAAAATCAAGGAAATCACTGCTGAACTGGGCCAGCATGGCCAAATTTCTGAAACAAATGTGTATAATTGGTTTCAGAATAGGCGTGCTCGATCCAAAAGAAGGCTGCAAAATGTGGCTCCTAGCAACACTGAATCAGAAGTGGACACTGAGGTTGATTCTAAGAATAAGAAGACAAAAGCTGAGGAGGAGTTTCAGTCCCAACATAACATAACAACTTCTGGAGGGGCTGAAAAGCTGTGCTTCCAGAACCCTCAAGTATACTCTGATCACTTGCACTACTTGAACCCTGATTCCAACAAACCATATTCCATGTTCCAATCAGATTGCAATCTGAAATCCACAAGAAATTCGAGTCATGTGTCTGTTTTTAATGAGATGCTGTCAAACTCAAGGAGTGAGTATGTAGGTGGAAAAATGGAAGTTGGTGGGAGTGCGCAGAGCAGAGAGAGAGAAAACGCAAAGGGCATTAAATCtgccatggcagcagcacccgctagagctcgtgccgattacgattacctcatcaagcttcttcttatcggcgacagcgGTGTGGGGAAGAGTTGTCTACTTTTGAGGTTTTCTGATGGCTCATTCACAACCAGTTTTATCACCACCATTGGTATCGATTTTAAGATAAGAACCATTGAACTAGACAGCAAACGGATTAAGTTACAAATCTGGGATACTGCTGGTCAGGAGCGGTTCCGAACTATTACCACAGCTTATTACCGTGGAGCCATGGGTATCTTGCTGGTTTATGATGTTACTGATGAAGCATCTTTCAATAATATTAGGAATTGGATCCGCAATATTGAACAACATGCTTCTGACAATGTAAACAAGATACTTGTTGGCAACAAGGCTGATATGGATGAAAGTAAAAGGGCTGTACCTACCTCCAAAGGGCAAGCACTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGTGCAAAAACCAACATGAACGTGGAAGAGGTCTTCTTTTCAATAGCAAGAGATATTAAGCAAAGGCTTGCAGACACAGATTCAAGAGCTGAGCCTCAGACTATCAAGATTAACCAACCTGACCAGGCAACCAGTGGTGGTCAACCTGCGCAAAAGTCGGCTTGCTGTGGTTCATGA 1500 0.4047 MVNVVELQKQLQRWQQSGNVNVNVNVDANGELMYVKVMTDEQLETLRKQIAVYGTICEQLIEMHRTLSAQQDLAGVRLGNIYCDQLMTSGGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRRLQNVAPSNTESEVDTEVDSKNKKTKAEEEFQSQHNITTSGGAEKLCFQNPQVYSDHLHYLNPDSNKPYSMFQSDCNLKSTRNSSHVSVFNEMLSNSRSEYVGGKMEVGGSAQSRERENAKGIKSAMAAAPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDSKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQATSGGQPAQKSACCGS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00966 499 MobiDBLite consensus disorder prediction 472 499 - -
Gma20g00966 499 Gene3D - 292 497 IPR027417 -
Gma20g00966 499 PANTHER BNAA07G37610D PROTEIN 265 497 - -
Gma20g00966 499 SMART ran_sub_2 304 496 - -
Gma20g00966 499 Gene3D - 99 163 - -
Gma20g00966 499 SMART ras_sub_4 300 463 - -
Gma20g00966 499 PRINTS Transforming protein P21 ras signature 299 320 - -
Gma20g00966 499 PRINTS Transforming protein P21 ras signature 322 338 - -
Gma20g00966 499 PRINTS Transforming protein P21 ras signature 340 362 - -
Gma20g00966 499 PRINTS Transforming protein P21 ras signature 402 415 - -
Gma20g00966 499 PRINTS Transforming protein P21 ras signature 438 460 - -
Gma20g00966 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 471 IPR027417 -
Gma20g00966 499 Pfam Homeodomain 97 157 IPR001356 GO:0003677
Gma20g00966 499 SMART rab_sub_5 299 463 - -
Gma20g00966 499 ProSiteProfiles small GTPase Rho family profile. 292 465 - -
Gma20g00966 499 CDD homeodomain 97 158 IPR001356 GO:0003677
Gma20g00966 499 SUPERFAMILY Homeodomain-like 95 160 IPR009057 -
Gma20g00966 499 MobiDBLite consensus disorder prediction 171 188 - -
Gma20g00966 499 SMART rho_sub_3 301 463 IPR001806 GO:0003924|GO:0005525
Gma20g00966 499 ProSiteProfiles small GTPase Ras family profile. 289 499 IPR001806 GO:0003924|GO:0005525
Gma20g00966 499 CDD Rab8_Rab10_Rab13_like 296 463 - -
Gma20g00966 499 TIGRFAM small_GTP: small GTP-binding protein domain 297 453 IPR005225 GO:0005525
Gma20g00966 499 MobiDBLite consensus disorder prediction 156 190 - -
Gma20g00966 499 ProSiteProfiles 'Homeobox' domain profile. 93 158 IPR001356 GO:0003677
Gma20g00966 499 Pfam Ras family 300 461 IPR001806 GO:0003924|GO:0005525
Gma20g00966 499 MobiDBLite consensus disorder prediction 465 499 - -
Gma20g00966 499 SMART arf_sub_2 282 464 - -
Gma20g00966 499 PANTHER LD44762P 265 497 - -
Gma20g00966 499 SMART HOX_1 95 162 IPR001356 GO:0003677
Gma20g00966 499 ProSiteProfiles small GTPase Rab1 family profile. 294 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00966 Gma-Chr20 36325005 36332041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00966 33 223 Wox Gene Family AT4G35550 60.577 2.46e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gma20g00966 Ras 1.4e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00966 K07901 - gmx:100817342 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02711 10 54325952 54328404 Gma20g00966 20 36325005 36332041 GST