Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00964 ATGAAGAGAGAAAGAGAAGTTGATAGTATAACCATGGCCAACTACTTGATGCTGCTTTCTCGAACCACCACCAACTTGAACACTTCCAACAACCGTGTGTTTGAGTGTAAGACATGTAACCGGCGGTTTGCGTCGTTTCAGGCATTGGGTGGCCACCGTGCGAGTCACAAGAAGCCAAGGTTGATGGGAGAGAGTGATAGCCAAGTGCTAATTCATGGTTCACCACCAAAGCCTAAAACACACGAATGTTCCATTTGTGGATTGGAGTTTGCAATAGGACAAGCTTTGGGAGGGCACATGAGGCGTCATAGAGCTGCAGCAGCATCAAATGGAAACATGCACACTACTATTAATTCTTGGTTGAGTTCTAGCAATAGTGGTGGTAGCACAGTTGATAATACTTTACCACCAAACATGAACAACAAGGCTAACAACACCAAGAGGGTTTTGTTTCCTGATTTGAATTTGACGCCTTTAGAGAATGATTTGGAGTTTTTGAAGTTTGGACACTGCTTTAATTGA 522 0.4349 MKREREVDSITMANYLMLLSRTTTNLNTSNNRVFECKTCNRRFASFQALGGHRASHKKPRLMGESDSQVLIHGSPPKPKTHECSICGLEFAIGQALGGHMRRHRAAAASNGNMHTTINSWLSSSNSGGSTVDNTLPPNMNNKANNTKRVLFPDLNLTPLENDLEFLKFGHCFN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00964 173 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Gma20g00964 173 PANTHER ZINC FINGER PROTEIN ZAT5 11 164 - -
Gma20g00964 173 Pfam C2H2-type zinc finger 81 105 - -
Gma20g00964 173 Pfam C2H2-type zinc finger 33 59 - -
Gma20g00964 173 Gene3D Classic Zinc Finger 31 103 - -
Gma20g00964 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Gma20g00964 173 PANTHER ZINC FINGER PROTEIN ZAT12 11 164 - -
Gma20g00964 173 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Gma20g00964 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Gma20g00964 173 SMART c2h2final6 34 56 IPR013087 -
Gma20g00964 173 SMART c2h2final6 81 103 IPR013087 -
Gma20g00964 173 SUPERFAMILY beta-beta-alpha zinc fingers 32 103 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00964 Gma-Chr20 36309315 36310091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00964 1 172 C2H2 Transcription Factor Family AT2G37430 43.386 7.30e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma20g00964 zf-C2H2_6 8.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00964 - - gmx:100500316 329.331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02714 10 54347748 54348639 Gma20g00964 20 36309315 36310091 GST