Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00946 ATGGAAGATATTTACAAGATGAACCCTCTTCTGTCATGTCCCGGGGGTGATGTTGTTAGGGAGGTCAACGTCAACGTTAATTCTGCCATTGCAGCTTCCGCTTCTGAATTGAATCTTGGACTGGTTGCTAACAACTTCTTTCAGCTGGAAGAACCCGAAAGTTCGGATATGTCGGATCGGTTCATCAAGACCCAGATCGCCACTCATCCTCTCTATCCAAATCTAGTATCCGCTTACATAGAATGCCGAAAGGTTGGAGCACCGCCAGAACTGGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACCGATGCTCTTCGAGAGATAGGAAATGATCCTGAGCTTGACGAGTTCATGGAGTCATACTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCGAAGCCATTCAACGAAGCGACCTTGTTTTTGTGCAGTATCGAATCACAACTCAGCAATCTTTGTAAGGGAACGCTAACAATGCCACTGAATAACAACCGCTCAGATGAGGCTGCAGGAATATCAGAGGATGAATTAAGTTGGGAGAAGGTGGAAGCAGTTGATGGTGACGAATCTTCTGGCCCACGTCCAGGTGATCAAGAGCTTAAAGAAATGCTTCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGGAAAAAAGGTAAGCTACCAAAGGATGCAAGGATGATACTCATGGACTGGTGGAACACACACTATAGGTGGCCTTATCCTACGGAGGAAGAGAAAGTGCAGCTATCAGAAATGACCGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAAAGGAAACGGCATTGGAAACCAACAGAGGACATGCGATTTGCCATTATGGATGGTGTAAGTGGCAGTGGCTTAGGAGGACCTATGTGA 924 0.4502 MEDIYKMNPLLSCPGGDVVREVNVNVNSAIAASASELNLGLVANNFFQLEEPESSDMSDRFIKTQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTDALREIGNDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCSIESQLSNLCKGTLTMPLNNNRSDEAAGISEDELSWEKVEAVDGDESSGPRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARMILMDWWNTHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPTEDMRFAIMDGVSGSGLGGPM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00946 307 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 297 - -
Gma20g00946 307 SMART KNOX1_2 60 104 IPR005540 GO:0003677|GO:0005634
Gma20g00946 307 Pfam KNOX2 domain 111 157 IPR005541 GO:0003677|GO:0005634
Gma20g00946 307 Pfam ELK domain 203 224 IPR005539 GO:0003677
Gma20g00946 307 SUPERFAMILY Homeodomain-like 225 298 IPR009057 -
Gma20g00946 307 CDD homeodomain 235 286 IPR001356 GO:0003677
Gma20g00946 307 SMART HOX_1 225 290 IPR001356 GO:0003677
Gma20g00946 307 Pfam KNOX1 domain 62 103 IPR005540 GO:0003677|GO:0005634
Gma20g00946 307 Pfam Homeobox KN domain 243 282 IPR008422 GO:0003677|GO:0006355
Gma20g00946 307 ProSiteProfiles 'Homeobox' domain profile. 223 286 IPR001356 GO:0003677
Gma20g00946 307 SMART ELK_2 203 224 IPR005539 GO:0003677
Gma20g00946 307 Gene3D - 221 293 - -
Gma20g00946 307 ProSitePatterns 'Homeobox' domain signature. 261 284 IPR017970 GO:0000981|GO:0006355
Gma20g00946 307 ProSiteProfiles ELK domain profile. 203 223 IPR005539 GO:0003677
Gma20g00946 307 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 297 - -
Gma20g00946 307 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00946 Gma-Chr20 36115073 36119889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00946 62 301 Homeobox Transcription Factor Family AT1G23380 54.941 4.70e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gma20g00946 KNOX2 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00946 - - gmx:102660463 597.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00946 20 36115073 36119889 Gma20g00946 20 36115073 36119889 ECH
Gma10g01452 10 41636580 41641713 Gma20g00946 20 36115073 36119889 GST
Gma19g02166 19 50531283 50537101 Gma20g00946 20 36115073 36119889 PCT
Gma03g02130 03 46804368 46826019 Gma20g00946 20 36115073 36119889 PCT
Gma20g00946 20 36115073 36119889 Gma19g02166 19 50531283 50537101 PCT
Gma20g00946 20 36115073 36119889 Gma03g02130 03 46804368 46826019 PCT