Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00944 ATGGATTGGGAATTTTCTAGAAAGGATAAAGCACGACCACAAAAGGAAAATGCTTCATCTTCTCGAATTACGGGATCTGTGGGTGTGGAGAAGGCATCAAAAGGAGATACCATTTCTTTTGATAATGCAAGAAATTCTCCAGGACAGTATGATTTATCAAGAATTAATCATTTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGACCTGGGTAACGAGTTTTTCAAGCAGAAAAAGTTTAAGGAAGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCAATATCAAGCTCAGAAGGCAAGCTTATGTTTTATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGAAAAATTAAAGAATCAATGGACGATGCTGAATTTGCCTTGAGGTTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTCTATGAGAAAGATATTCTTCAGAAAGCATCAGGGGTTCTGAGAAGCACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGAAAAAGTTAATGGAGACAGCATCCACCCCATTTCACGTAGTACTCAAAAGTCTGGACTAGCTGAAGTTCATCATCATAAAAAGGATAATAAACGGCAAATACTTGTTAAAGAATCACTCTTAACAGAGGATGTTGATGGCAGAGAAATAAAAGCCAGAAGCTGGCCTCAATCACAAGGAGATGATGGTTCTAAGGGAGGTTTGAGTGCAAGCAACAGTTTGGAGCAGAGAAATCACAGAATTACCAAGCCAGAAATGAAAGCTTCTGTTCAACAGCTTGCTTCTCGCGCTGCTTCTAGAGCCATGTCTGAAGCTGCCAAAAACGTAACACCTCCAACTACAGCTTATCAGTTTGAGGTCTCCTGGAGAGCATTTTCAGGTGATCTTGCTCTGCAGGCTCGTCTATTAAAGGCTATATCTCCCCATGAATTGCCGAAAATATTCAAAAATGCCTTGTCTTCTACCATACTAATTGAGATCATCAAGTGTCTTGCATCTCTTTTCACTGAGGACATGGATCTGGTTGTCAGTTATTTGGAGCATTTGACCAAGGTACCAAGATTTGATGTGATTGTAATGTGCCTTTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAGCGGTGAGGCAACACCAATAGAGTATGCAGAGATTCTGGACAACCTTCAATCAAAGTTCGGCCTTGGACAGTGA 1353 0.4087 MDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQYDLSRINHLHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRQAYVLFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHHHKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPEMKASVQQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHELPKIFKNALSSTILIEIIKCLASLFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEVFSGEATPIEYAEILDNLQSKFGLGQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00944 450 Gene3D Tetratricopeptide repeat domain 62 173 IPR011990 GO:0005515
Gma20g00944 450 SMART tpr_5 142 175 IPR019734 GO:0005515
Gma20g00944 450 SMART tpr_5 70 103 IPR019734 GO:0005515
Gma20g00944 450 MobiDBLite consensus disorder prediction 1 16 - -
Gma20g00944 450 MobiDBLite consensus disorder prediction 234 250 - -
Gma20g00944 450 MobiDBLite consensus disorder prediction 205 250 - -
Gma20g00944 450 Pfam Potential Monad-binding region of RPAP3 326 415 IPR025986 -
Gma20g00944 450 MobiDBLite consensus disorder prediction 1 45 - -
Gma20g00944 450 MobiDBLite consensus disorder prediction 266 286 - -
Gma20g00944 450 ProSiteProfiles TPR repeat profile. 142 175 IPR019734 GO:0005515
Gma20g00944 450 PANTHER OS05G0129900 PROTEIN 2 448 - -
Gma20g00944 450 MobiDBLite consensus disorder prediction 272 286 - -
Gma20g00944 450 SUPERFAMILY TPR-like 68 189 IPR011990 GO:0005515
Gma20g00944 450 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00944 Gma-Chr20 36066229 36071373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00944 36 179 Calmodulin-binding Proteins AT3G25230 26.452 5.67e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00944 K23002 - gmx:100808255 851.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g00944 20 36066229 36071373 Gma20g00944 20 36066229 36071373 ECH
Gma10g01450 10 41594480 41599961 Gma20g00944 20 36066229 36071373 GST