Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00942 ATGTCTCGCAAAGAAAACCTCCTATGTGAACTGTATACAAAGAAAGGTACCTGGAAGATTTTCGTGCGAATAACTAATATGTGGTGTCTTAACAAACATAATGGTCGACAATCCATTGAGATGGTGTTGATGGACCATACGGGTACAAAGATTGGGGCAACTCTATGGCAAGAATTGTTCCCTGAATTTGAGCCCAAGTTGCGTTGTGGTGGTGCATATGTTATTCAGAACGCGAAGGTTGTTGATACTCATTTTGACTACAAAGTGAGTGCAATTAAATATTTGGTTTATTTTGTGAAGACAACGTCTGTCAAAGAGGTGGACAGACCTGAGATTCCTCCTAATGTTCATGCCATTACTTCATTTGCTGATATAATTTTAGGCGTTGCAAAACCTGATACTTTAGTTGATATTGTGGGTGTTATTGCTAAAGTGATTGAACGCAAAACAGTTAATCCAACATACATAGTGACTGTCAAGTTGAGAGACAACAGTCATGTTGAGATCATCATGACTGTGTGGGAGGAATATGCTCTTCAGCTGGATGATGCTATTGAGAAAAACCATTTTGTGCAAAAGCCATTGGTTGTTATGCTAACTCTTGCTAAGATCAAAGAAACCAAGGACAAGTATCCCCTCAGTGTACAGAATATAAAGCATGGTTCGAAGTTGTATGTGAATGGTGACAAAAACGAAATTCAACAGTTCCATGATAGTTTACGTGTGCCATTTTATATTGGCGCTCTAGATGATGACGGTGGTGTTTCTCAGTCACAGTCTACCCAGAATTGCCAAGATAAGTTTTTGCATAATGTTCAAATAGTGAGCTTTGGTGAAATAAAGACTCTGCGACAGGATTGTTACTGTTTGACTGTGGGCACTGTCGATGAGGTGATGATTGATACACCATGGAGTTATGACAGTTGTCCATACTGTACAACCACTTTTGATCCATTAAAAATAGGTGCCGCCTGCCGTTCGTGCCAGAATCATGTTACTCACACTATTCCAAGGTATAAGTTAGTTGTCAAGATGGAACAGAACGGGGAGAAGGCAAACTTCCATTTTTGGGATGCAGTATGTATCATAATATTTGGTAAAACTGCAGATGAATGTCGTCAAGAGTTGATTGCGAGTGGTGATGAGATCAAGGTGTTCCCTGCGTGTGTTGATCAATTGTTGGGTAAAACTTGGGTTGTCAGATTCAAACACCGTATACAGATGCACCAATCATATGCGTTGGATTTTAGTGAACAGGAACATCATATACAGTCAGTGATATCCACGCTAGGTCTACAAGATGAACAATGTATAAGCAACAAGTCTGCCGCTGTTGGTGTTGCATCTTCATCACAACAAGATTACCATCCTACAGATCATCTTGGAAATAGTACATATACACAGGACCCACCTATGTTATTCGCATCCGGTTTGACATACCAATTTAAGGCCGTATTTCATGTTGACAGGAATATCATTGAGGTACCCTCTGTTTATCATAAACAATGGGCTCCATATTACCCGAATTATGTGGTGTTGGACTACAATGGAAAGAAGCACTATATAAGAGTTAGAAAATTTGGTAACCGAGTCTACATTGCTGATGGTCTCAAACACTTCAGGAGGGATATGGGAATATATGAAGGTGTGATGATCACATTTGCAGCGCCGGACATCAATTGGAAGTTTGATATCCACTTATCACCGCCACTACATGCACAGACATGTGACAGGCCTGTCCATTCTGCCAGAGAATATGTGTTTACTGTGGATGTCGACAATCGGATGATTGCTAGACTTTATCCATTGGTACTGCCACTCGATGTTGTGGGTTATGTTAATGCAGGAGACGACTATGTTACTGTCCTTGGTGTTCGTGGGCGTCGTCACTTTTGGAAGTTGAGTATGCATAATGGGCTTCGATGTTTTGCTGAACCATGGTTCCAATTCTTAACAGAAAATGATTTGATGGTCGGTGACGAAGTTGCCTTTTATTTCAGGCCGAATCAACTTCTTTGGGAGGTCATTCCCAGAAAGCAAACTGTGTGGGACGAGGACGAGGACGACTCCCCATGA 2076 0.4104 MSRKENLLCELYTKKGTWKIFVRITNMWCLNKHNGRQSIEMVLMDHTGTKIGATLWQELFPEFEPKLRCGGAYVIQNAKVVDTHFDYKVSAIKYLVYFVKTTSVKEVDRPEIPPNVHAITSFADIILGVAKPDTLVDIVGVIAKVIERKTVNPTYIVTVKLRDNSHVEIIMTVWEEYALQLDDAIEKNHFVQKPLVVMLTLAKIKETKDKYPLSVQNIKHGSKLYVNGDKNEIQQFHDSLRVPFYIGALDDDGGVSQSQSTQNCQDKFLHNVQIVSFGEIKTLRQDCYCLTVGTVDEVMIDTPWSYDSCPYCTTTFDPLKIGAACRSCQNHVTHTIPRYKLVVKMEQNGEKANFHFWDAVCIIIFGKTADECRQELIASGDEIKVFPACVDQLLGKTWVVRFKHRIQMHQSYALDFSEQEHHIQSVISTLGLQDEQCISNKSAAVGVASSSQQDYHPTDHLGNSTYTQDPPMLFASGLTYQFKAVFHVDRNIIEVPSVYHKQWAPYYPNYVVLDYNGKKHYIRVRKFGNRVYIADGLKHFRRDMGIYEGVMITFAAPDINWKFDIHLSPPLHAQTCDRPVHSAREYVFTVDVDNRMIARLYPLVLPLDVVGYVNAGDDYVTVLGVRGRRHFWKLSMHNGLRCFAEPWFQFLTENDLMVGDEVAFYFRPNQLLWEVIPRKQTVWDEDEDDSP 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00942 691 SUPERFAMILY Nucleic acid-binding proteins 9 108 IPR012340 -
Gma20g00942 691 SUPERFAMILY Nucleic acid-binding proteins 284 410 IPR012340 -
Gma20g00942 691 CDD RPA1_DBD_B_like 137 236 - -
Gma20g00942 691 Pfam Domain of unknown function DUF223 40 134 IPR003871 -
Gma20g00942 691 CDD RPA1_DBD_A_like 19 104 - -
Gma20g00942 691 Gene3D - 111 243 IPR012340 -
Gma20g00942 691 SUPERFAMILY DNA-binding pseudobarrel domain 484 554 IPR015300 -
Gma20g00942 691 Gene3D - 8 109 IPR012340 -
Gma20g00942 691 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 11 398 - -
Gma20g00942 691 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Gma20g00942 691 Gene3D - 253 429 IPR012340 -
Gma20g00942 691 SUPERFAMILY DNA-binding pseudobarrel domain 603 670 IPR015300 -
Gma20g00942 691 PANTHER REPLICATION FACTOR A 1, RFA1 11 398 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00942 Gma-Chr20 36003496 36009130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00942 8 356 Core DNA Replication Machinery Family AT2G06510 21.123 2.41e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00942 - - gmx:102667453 858.211