Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g00940 ATGGAGAGCAAAGAGGAGAGGAAGAGGATGCTTCCGTCGCCATCGGAGACCCAACTCAAGGGCCTTGCTATTGTTAGCACCTATGCATGTGCTGACGAGTCTCATGCAGAACAATGTTCCCCGGGTCATGACTCCGAGAGCTTCTATATGAAACTCGCTGAGTTGTTGGAGTCTTCTGGACTGAGTCTCATTTTCAATGTCCGAGAAACTTTGCTGGACTTGTACCTGTTATACTTGGAGGTGACTAGAAGAGGAGGATATCACCAGGTTGGTCGAGAAAAGAAATGGGGTGAAGTAGTCTTTGCCATGAAATTGGAAGCGAATAGTGTAAAGTTATGTGCTCAAGTTGAAAAGCTTTATGCACATCTTCTCTACCAGTTTGAGAAATTGTACTTCTATAGGCATCCTGCAAAGCAAGCTGGATCTATCAGCACCAAAGGTCCACTTCAAAAGAAGCGGAATTCAACAGCTAGTTTATCTCATACAATGAATATTAAAGATGGTCAGATGGTGACAGAGATGTCCAAGGACTACTCTTGCCACATGACAGCAGGGGCAGGGTATGTGGAACAGCCGGTGTTTTTACCGCCACCCTCGAATGTCAAAGAAATGAAGAAACGCCGAGGTTCTCCACCGGGACGAAAGACTGCATATCAGATATTCCTCAAGCATGAATGTGCTCGATTGAAAACTTGTAGTCAGGCCTTAGATGGCCGGAAAATCCTTCGTTTGGCTATTGATACATGGAGGAATATGTCTGACATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAGGAAGCAATGAATGGTCACAATAAACAGCAGAGCACCCAAGATACCATAAAGGAGGAGAAGTGGCATAGTCTGAGTGGTGATTATCTTGTAACTTCACAACCTGAGACAGATAACTCCCTTGTCAACAAAGCAGCTGCTGGGTTAGTTCTTAAAATGACTGAAAAAGCACCAACGGATCCTTCATATCTAATGGAGTGGGATGCTTATTGTTCACTGGTTTTGCCAACTAGGGAATCCGAGTAA 1047 0.4441 MESKEERKRMLPSPSETQLKGLAIVSTYACADESHAEQCSPGHDSESFYMKLAELLESSGLSLIFNVRETLLDLYLLYLEVTRRGGYHQVGREKKWGEVVFAMKLEANSVKLCAQVEKLYAHLLYQFEKLYFYRHPAKQAGSISTKGPLQKKRNSTASLSHTMNIKDGQMVTEMSKDYSCHMTAGAGYVEQPVFLPPPSNVKEMKKRRGSPPGRKTAYQIFLKHECARLKTCSQALDGRKILRLAIDTWRNMSDIEKQPYVEESKKNKEAMNGHNKQQSTQDTIKEEKWHSLSGDYLVTSQPETDNSLVNKAAAGLVLKMTEKAPTDPSYLMEWDAYCSLVLPTRESE 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g00940 348 SUPERFAMILY ARID-like 42 134 IPR036431 GO:0003677
Gma20g00940 348 Gene3D High mobility group box domain 197 280 IPR036910 -
Gma20g00940 348 MobiDBLite consensus disorder prediction 266 285 - -
Gma20g00940 348 Gene3D - 31 148 IPR036431 GO:0003677
Gma20g00940 348 CDD HMGB-UBF_HMG-box 211 270 - -
Gma20g00940 348 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 1 335 - -
Gma20g00940 348 ProSiteProfiles ARID domain profile. 42 132 IPR001606 GO:0003677
Gma20g00940 348 Pfam HMG-box domain 213 274 IPR009071 -
Gma20g00940 348 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 335 - -
Gma20g00940 348 SMART bright_3 43 133 IPR001606 GO:0003677
Gma20g00940 348 SUPERFAMILY HMG-box 194 270 IPR036910 -
Gma20g00940 348 SMART ARID_2 39 128 - -
Gma20g00940 348 Pfam ARID/BRIGHT DNA binding domain 45 128 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g00940 Gma-Chr20 35986218 35988637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g00940 44 269 ARID Transcription Factor Family AT3G13350 23.346 1.48e-10 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Gma20g00940 ARID 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g00940 - - var:108325455 419.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g01446 10 41537728 41544629 Gma20g00940 20 35986218 35988637 GST